Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQL34_RS00215 Genome accession   NZ_LS483339
Coordinates   30379..31152 (+) Length   257 a.a.
NCBI ID   WP_084828404.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25379..36152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS00195 (NCTC12958_00041) - 25507..26931 (+) 1425 WP_046206377.1 CHAP domain-containing protein -
  DQL34_RS00200 (NCTC12958_00042) - 27145..28110 (+) 966 WP_011680585.1 ribose-phosphate diphosphokinase -
  DQL34_RS00205 - 28159..29005 (-) 847 Protein_19 transposase -
  DQL34_RS00210 (NCTC12958_00044) - 29217..30392 (+) 1176 WP_111679058.1 pyridoxal phosphate-dependent aminotransferase -
  DQL34_RS00215 (NCTC12958_00045) recO 30379..31152 (+) 774 WP_084828404.1 DNA repair protein RecO Machinery gene
  DQL34_RS00220 (NCTC12958_00046) plsX 31368..32372 (+) 1005 WP_100273488.1 phosphate acyltransferase PlsX -
  DQL34_RS00225 (NCTC12958_00047) - 32372..32617 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  DQL34_RS00230 (NCTC12958_00048) purC 32902..33609 (+) 708 WP_100262640.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29754.98 Da        Isoelectric Point: 5.0766

>NTDB_id=1018516 DQL34_RS00215 WP_084828404.1 30379..31152(+) (recO) [Streptococcus thermophilus strain NCTC12958]
MQKLESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1018516 DQL34_RS00215 WP_084828404.1 30379..31152(+) (recO) [Streptococcus thermophilus strain NCTC12958]
ATGCAGAAGCTTGAGAGTAGGGGGGTTATCCTCTTCAATCGTAATTATCGCGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAGTGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607