Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | AABJ87_RS02575 | Genome accession | NZ_AP027642 |
| Coordinates | 511234..511863 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain PSJ-32-1 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 502062..539699 | 511234..511863 | within | 0 |
Gene organization within MGE regions
Location: 502062..539699
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ87_RS02525 (VEE41_04900) | tusE | 502333..502662 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| AABJ87_RS02530 (VEE41_04910) | yccX | 502659..502937 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| AABJ87_RS02535 (VEE41_04920) | rlmI | 503032..504222 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| AABJ87_RS02540 (VEE41_04930) | hspQ | 504280..504597 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| AABJ87_RS02545 (VEE41_04940) | yccU | 504642..505055 (-) | 414 | WP_001301418.1 | CoA-binding protein | - |
| AABJ87_RS02550 (VEE41_04950) | yccT | 505228..505890 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| AABJ87_RS02555 (VEE41_04960) | mgsA | 505986..506444 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| AABJ87_RS02560 (VEE41_04970) | helD | 506476..508530 (-) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| AABJ87_RS02565 (VEE41_04980) | yccF | 508653..509099 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| AABJ87_RS02570 (VEE41_04990) | yccS | 509109..511271 (+) | 2163 | WP_000875061.1 | YccS family putative transporter | - |
| AABJ87_RS02575 (VEE41_05000) | sxy/tfoX | 511234..511863 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| AABJ87_RS02580 (VEE41_05010) | sulA | 512082..512591 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| AABJ87_RS02585 (VEE41_05030) | ompA | 512948..513988 (+) | 1041 | WP_241233288.1 | porin OmpA | - |
| AABJ87_RS02590 (VEE41_05040) | matP | 514064..514516 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| AABJ87_RS02595 (VEE41_05050) | ycbZ | 514702..516462 (+) | 1761 | WP_000156518.1 | Lon protease family protein | - |
| AABJ87_RS02600 (VEE41_05060) | fabA | 516531..517049 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| AABJ87_RS02605 (VEE41_05070) | rmf | 517119..517286 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| AABJ87_RS02610 (VEE41_05080) | pqiC | 517542..518105 (-) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| AABJ87_RS02615 (VEE41_05090) | pqiB | 518102..519742 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| AABJ87_RS02620 (VEE41_05100) | pqiA | 519747..521000 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| AABJ87_RS02625 (VEE41_05110) | uup | 521130..523037 (-) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| AABJ87_RS02630 (VEE41_05120) | rlmKL | 523049..525157 (-) | 2109 | WP_001086539.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| AABJ87_RS02635 (VEE41_05130) | ycbX | 525401..526510 (+) | 1110 | WP_000212426.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| AABJ87_RS02640 (VEE41_05140) | zapC | 526507..527049 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| AABJ87_RS02645 (VEE41_05150) | pyrD | 527223..528233 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| AABJ87_RS02650 (VEE41_05160) | ycbF | 528344..529081 (-) | 738 | WP_001111465.1 | fimbrial chaperone | - |
| AABJ87_RS02655 (VEE41_05170) | ycbV | 529047..529562 (-) | 516 | WP_241233286.1 | fimbrial protein | - |
| AABJ87_RS02660 (VEE41_05180) | ycbU | 529570..530112 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| AABJ87_RS02665 (VEE41_05190) | elfG | 530124..531194 (-) | 1071 | WP_001165668.1 | fimbrial protein | - |
| AABJ87_RS02670 (VEE41_05200) | - | 531185..533203 (-) | 2019 | Protein_525 | fimbrial biogenesis usher protein | - |
| AABJ87_RS02680 (VEE41_05230) | - | 534534..535121 (-) | 588 | Protein_527 | FimD/PapC N-terminal domain-containing protein | - |
| AABJ87_RS02685 (VEE41_05240) | elfD | 535146..535847 (-) | 702 | WP_001295349.1 | molecular chaperone | - |
| AABJ87_RS02690 (VEE41_05250) | elfA | 535930..536469 (-) | 540 | WP_000750293.1 | fimbrial protein | - |
| AABJ87_RS02695 (VEE41_05260) | ssuE | 536825..537400 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| AABJ87_RS02700 (VEE41_05270) | ssuA | 537393..538352 (+) | 960 | WP_001244308.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| AABJ87_RS02705 (VEE41_05280) | ssuD | 538349..539494 (+) | 1146 | WP_000056006.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=101831 AABJ87_RS02575 WP_000839153.1 511234..511863(-) (sxy/tfoX) [Escherichia coli strain PSJ-32-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=101831 AABJ87_RS02575 WP_000839153.1 511234..511863(-) (sxy/tfoX) [Escherichia coli strain PSJ-32-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |