Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB0962_RS01585 Genome accession   NZ_CP160130
Coordinates   335418..336236 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain AB37-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330418..341236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0962_RS01550 (AB0962_01550) - 331000..331130 (-) 131 Protein_296 hypothetical protein -
  AB0962_RS01555 (AB0962_01555) rpoZ 331169..331447 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB0962_RS01560 (AB0962_01560) gmk 331520..332149 (-) 630 WP_000015937.1 guanylate kinase -
  AB0962_RS01565 (AB0962_01565) ispH 332272..333222 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB0962_RS01570 (AB0962_01570) fimU 333392..333865 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB0962_RS01575 (AB0962_01575) pilV 333859..334419 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB0962_RS01580 (AB0962_01580) pilW 334420..335421 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  AB0962_RS01585 (AB0962_01585) pilX 335418..336236 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB0962_RS01590 (AB0962_01590) pilY1 336248..340102 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  AB0962_RS01595 (AB0962_01595) pilY2 340115..340597 (+) 483 WP_029424121.1 type IV pilin protein Machinery gene
  AB0962_RS01600 (AB0962_01600) pilE 340594..341019 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=1018230 AB0962_RS01585 WP_000149377.1 335418..336236(+) (pilX) [Acinetobacter baumannii strain AB37-AUFP]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1018230 AB0962_RS01585 WP_000149377.1 335418..336236(+) (pilX) [Acinetobacter baumannii strain AB37-AUFP]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCTACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment