Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   DQL30_RS09320 Genome accession   NZ_LS483333
Coordinates   1397480..1397698 (-) Length   72 a.a.
NCBI ID   WP_072135532.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392480..1402698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS07130 (NCTC12048_01422) - 1393418..1393819 (-) 402 WP_023605036.1 hypothetical protein -
  DQL30_RS07135 (NCTC12048_01423) - 1394013..1394294 (-) 282 WP_011054252.1 hypothetical protein -
  DQL30_RS07150 (NCTC12048_01424) - 1394833..1395033 (-) 201 WP_003060803.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DQL30_RS07155 (NCTC12048_01425) - 1395046..1395273 (-) 228 WP_111713896.1 Blp family class II bacteriocin -
  DQL30_RS07160 (NCTC12048_01426) - 1395558..1397283 (+) 1726 Protein_1327 peptide cleavage/export ABC transporter -
  DQL30_RS09320 comE/blpR 1397480..1397698 (-) 219 WP_072135532.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  DQL30_RS09325 (NCTC12048_01428) - 1397988..1398242 (+) 255 WP_111713898.1 hypothetical protein -
  DQL30_RS07180 (NCTC12048_01429) - 1398557..1399033 (-) 477 WP_111713899.1 NUDIX hydrolase -
  DQL30_RS07185 (NCTC12048_01430) era 1399053..1399949 (-) 897 WP_002985743.1 GTPase Era -
  DQL30_RS07190 (NCTC12048_01431) - 1400069..1400476 (-) 408 WP_002985746.1 diacylglycerol kinase family protein -
  DQL30_RS07195 (NCTC12048_01432) ybeY 1400457..1400954 (-) 498 WP_002985748.1 rRNA maturation RNase YbeY -
  DQL30_RS07200 (NCTC12048_01433) - 1401113..1401688 (-) 576 WP_009880369.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8666.13 Da        Isoelectric Point: 10.5045

>NTDB_id=1018027 DQL30_RS09320 WP_072135532.1 1397480..1397698(-) (comE/blpR) [Streptococcus pyogenes strain NCTC12048]
MVLYSTRERIEFYGELSEIVKQEPRLFQCHRSFVVNPYNISSIQRLERKVYLKKRFILSSIKAKSYCSKRSS

Nucleotide


Download         Length: 219 bp        

>NTDB_id=1018027 DQL30_RS09320 WP_072135532.1 1397480..1397698(-) (comE/blpR) [Streptococcus pyogenes strain NCTC12048]
TTGGTTCTTTATTCTACTAGAGAAAGGATTGAATTTTATGGGGAGTTATCTGAAATCGTTAAGCAAGAACCAAGATTATT
TCAATGCCATCGATCATTTGTTGTTAATCCCTACAATATATCTTCAATACAACGATTAGAACGTAAGGTTTATTTAAAAA
AACGGTTCATCTTGTCTAGTATCAAGGCTAAAAGTTACTGCTCTAAAAGAAGCAGTTGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(3-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

56.604

73.611

0.417