Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABZS47_RS06005 Genome accession   NZ_CP160099
Coordinates   1268553..1269494 (-) Length   313 a.a.
NCBI ID   WP_003661250.1    Uniprot ID   A0A1E9VTV4
Organism   Moraxella catarrhalis strain A_01_mct     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263553..1274494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZS47_RS05985 (ABZS47_05990) purF 1264770..1266299 (-) 1530 WP_003659765.1 amidophosphoribosyltransferase -
  ABZS47_RS05990 (ABZS47_05995) - 1266380..1266892 (-) 513 WP_003658194.1 CvpA family protein -
  ABZS47_RS05995 (ABZS47_06000) - 1266897..1267922 (-) 1026 WP_003658196.1 quinone-dependent dihydroorotate dehydrogenase -
  ABZS47_RS06000 (ABZS47_06005) - 1267963..1268556 (-) 594 WP_003658198.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ABZS47_RS06005 (ABZS47_06010) pilA 1268553..1269494 (-) 942 WP_003661250.1 signal recognition particle-docking protein FtsY Machinery gene
  ABZS47_RS06010 (ABZS47_06015) - 1269622..1271745 (-) 2124 WP_003658202.1 PhoX family protein -
  ABZS47_RS06015 (ABZS47_06020) - 1272160..1273572 (+) 1413 WP_003658205.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33664.60 Da        Isoelectric Point: 5.2587

>NTDB_id=1018011 ABZS47_RS06005 WP_003661250.1 1268553..1269494(-) (pilA) [Moraxella catarrhalis strain A_01_mct]
MSENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTARGDLIYSH
ALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWG
ERNGIPVIAQGHGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTG
QNAINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPKDFVDALLEKEE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1018011 ABZS47_RS06005 WP_003661250.1 1268553..1269494(-) (pilA) [Moraxella catarrhalis strain A_01_mct]
ATGAGCGAAAACGAAAAAGGTGGCTGGTTTTCCCGCATGAAAGCTGGACTATCAAAGTCAAGTAAAAACCTATCAGAAGG
GCTGGTTAATGTCTTGGTTGGTGGCAAACAGATTGATGATGAGCTGCTTGAGGAAGTTGAAGATCAGCTACTGGTTGCTG
ATATTGGTGTCAATGCCACCAATCGCATTATCAAAAATCTCACCGAGCAGACCGCGCGTGGCGATTTGATTTACTCGCAT
GCTTTGTATAAAGCACTCAAAACCGAGTTGACCGACATTTTGACGCCAAAAGTTGCACCTTTGATTATTGATACCACCAA
AAAGCCCTATGTCATTTTGATGGTGGGTGTCAATGGTGTTGGTAAGACCACCACAATCGGTAAGCTTGCCAAGCGTTTAC
AAAATGAGGGTAAGTCGGTCATGCTTGCCGCTGGCGACACTTTTCGAGCCGCCGCCACCGAGCAGCTACAAATTTGGGGT
GAGCGAAATGGCATTCCTGTCATCGCTCAAGGTCATGGCTCAGACAGTGCTTCGGTGATTTTTGATGCCATGCAGTCTGC
CAAGGCAAAGGGCATTGATGTGCTTATCGCTGATACAGCAGGACGCCTACAAAATAAAACGCATCTGATGAATGAACTTG
AAAAGGTTGTGCGTGTGATGAAAAAGGGCGACGAAACTGCTCCGCATGAGACGATGATCGTGCTAGATGCAGGCACAGGT
CAAAACGCCATCAATCAAGTGCAAGTATTTTCAGAAGCAGTGAATTTAACTGGCATCAGTGTTACAAAGCTAGATGGGAC
AGCCAAAGGTGGTGTGGTATTTAATATCGCCCAAAATACGGATATTCCCATCCGTTTTATCGGCGTTGGAGAGGGTATTG
ACGACCTACAGCCATTTAAGCCAAAAGATTTTGTTGATGCACTTTTGGAAAAAGAAGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(110-309)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E9VTV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.074

98.722

0.524

Multiple sequence alignment