Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ABZU10_RS05105 Genome accession   NZ_CP160093
Coordinates   1314222..1314923 (+) Length   233 a.a.
NCBI ID   WP_020973693.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain 1683_1263_1_CBA4     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309222..1319923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU10_RS05080 (ABZU10_05065) - 1309410..1311152 (-) 1743 WP_375169146.1 FTR1 family protein -
  ABZU10_RS05085 (ABZU10_05070) - 1311336..1311671 (-) 336 WP_230453933.1 hypothetical protein -
  ABZU10_RS05090 (ABZU10_05075) - 1311818..1312582 (-) 765 WP_032841590.1 ABC transporter permease -
  ABZU10_RS05095 (ABZU10_05080) - 1312596..1313321 (-) 726 WP_102155501.1 ABC transporter permease -
  ABZU10_RS05100 (ABZU10_05085) - 1313318..1314082 (-) 765 WP_004129738.1 ABC transporter ATP-binding protein -
  ABZU10_RS05105 (ABZU10_05090) scnR 1314222..1314923 (+) 702 WP_020973693.1 response regulator transcription factor Regulator
  ABZU10_RS05110 (ABZU10_05095) - 1314930..1316354 (+) 1425 WP_375169147.1 sensor histidine kinase -
  ABZU10_RS05115 (ABZU10_05100) - 1316662..1317717 (-) 1056 WP_375169148.1 FAD:protein FMN transferase -
  ABZU10_RS05120 (ABZU10_05105) - 1317978..1318700 (-) 723 WP_375169149.1 Fic/DOC family protein -
  ABZU10_RS05125 (ABZU10_05110) - 1318729..1318911 (-) 183 WP_004135896.1 antitoxin VbhA family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26452.62 Da        Isoelectric Point: 5.0030

>NTDB_id=1017932 ABZU10_RS05105 WP_020973693.1 1314222..1314923(+) (scnR) [Gardnerella vaginalis strain 1683_1263_1_CBA4]
MNRNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEYDLLSALYRNAGCIVTIDALCEAAWGANPFGYENSLMAHIRRIREKIELNPSQPVSLITVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1017932 ABZU10_RS05105 WP_020973693.1 1314222..1314923(+) (scnR) [Gardnerella vaginalis strain 1683_1263_1_CBA4]
ATGAATCGGAATGATTATTTATTGAACAAGCATCTGCTACTTGTTGATGATGAGCAGGAACTTCTAGATATGGTTGTATC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCAGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCAGACGGTAATGGGTTTGAGTTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAACCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAATAACGAACATATTCCACTCACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCTCAGCCTGTTTCTTTAATAACAGTTAAAGGTTTAGGATATAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.708

0.502

Multiple sequence alignment