Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ABZU00_RS02565 Genome accession   NZ_CP160092
Coordinates   578364..579065 (+) Length   233 a.a.
NCBI ID   WP_391496368.1    Uniprot ID   -
Organism   Gardnerella swidsinskii strain 0756_546_1_1_CBA7     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 573364..584065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU00_RS02535 (ABZU00_02520) - 573612..574550 (+) 939 WP_391496367.1 ABC transporter permease -
  ABZU00_RS02540 (ABZU00_02525) - 574945..575589 (+) 645 WP_119527492.1 helix-turn-helix transcriptional regulator -
  ABZU00_RS02545 (ABZU00_02530) - 575647..575769 (-) 123 WP_349815773.1 IS3 family transposase -
  ABZU00_RS02550 (ABZU00_02535) - 575960..576724 (-) 765 WP_391496454.1 ABC transporter permease -
  ABZU00_RS02555 (ABZU00_02540) - 576738..577463 (-) 726 WP_119527491.1 ABC transporter permease -
  ABZU00_RS02560 (ABZU00_02545) - 577460..578224 (-) 765 WP_116712553.1 ABC transporter ATP-binding protein -
  ABZU00_RS02565 (ABZU00_02550) scnR 578364..579065 (+) 702 WP_391496368.1 response regulator transcription factor Regulator
  ABZU00_RS02570 (ABZU00_02555) - 579072..580469 (+) 1398 WP_119527489.1 sensor histidine kinase KdpD -
  ABZU00_RS02575 (ABZU00_02560) - 580832..581317 (+) 486 WP_391496369.1 NUDIX hydrolase -
  ABZU00_RS02580 (ABZU00_02565) - 581925..582431 (+) 507 WP_391496370.1 GNAT family N-acetyltransferase -
  ABZU00_RS02585 (ABZU00_02570) - 582548..583507 (+) 960 WP_391496455.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26424.57 Da        Isoelectric Point: 5.0030

>NTDB_id=1017925 ABZU00_RS02565 WP_391496368.1 578364..579065(+) (scnR) [Gardnerella swidsinskii strain 0756_546_1_1_CBA7]
MNRNDYLLNKHLLLVDDEQELLDMVASILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEYDLLSALYRNAGCIVTIDALCEAAWGANPFGYENSLMAHIRRIREKIELNPSQPVSLITVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1017925 ABZU00_RS02565 WP_391496368.1 578364..579065(+) (scnR) [Gardnerella swidsinskii strain 0756_546_1_1_CBA7]
ATGAATCGGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGCGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGCTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAACTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAACAACGAACATATTCCGCTTACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCTTTAATAACAGTTAAAGGCTTAGGATATAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(13-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.708

0.502

Multiple sequence alignment