Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZU09_RS04870 Genome accession   NZ_CP160090
Coordinates   1039512..1040888 (+) Length   458 a.a.
NCBI ID   WP_006585828.1    Uniprot ID   A0AAP3GY35
Organism   Lactobacillus mulieris strain 294_F1_4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034512..1045888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU09_RS04840 (ABZU09_04830) - 1035224..1035391 (+) 168 WP_022091072.1 hypothetical protein -
  ABZU09_RS04845 (ABZU09_04835) - 1035402..1036079 (+) 678 WP_240401441.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ABZU09_RS04850 (ABZU09_04840) - 1036165..1037100 (+) 936 WP_006587659.1 AAA family ATPase -
  ABZU09_RS04855 (ABZU09_04845) pepC 1037149..1038498 (-) 1350 WP_006585831.1 aminopeptidase C -
  ABZU09_RS04860 (ABZU09_04850) - 1038565..1038858 (-) 294 WP_006587660.1 GNAT family N-acetyltransferase -
  ABZU09_RS04865 (ABZU09_04855) - 1038959..1039498 (+) 540 WP_006585829.1 dUTP diphosphatase -
  ABZU09_RS04870 (ABZU09_04860) radA 1039512..1040888 (+) 1377 WP_006585828.1 DNA repair protein RadA Machinery gene
  ABZU09_RS04875 (ABZU09_04865) gltX 1040963..1042462 (+) 1500 WP_006587661.1 glutamate--tRNA ligase -
  ABZU09_RS04880 (ABZU09_04870) - 1042595..1043023 (+) 429 WP_006585826.1 hypothetical protein -
  ABZU09_RS04885 (ABZU09_04875) - 1043141..1043488 (+) 348 WP_006587662.1 hypothetical protein -
  ABZU09_RS04890 (ABZU09_04880) - 1043708..1043914 (+) 207 WP_034530165.1 DUF6007 family protein -
  ABZU09_RS04895 (ABZU09_04885) cysS 1044009..1045430 (+) 1422 WP_006585822.1 cysteine--tRNA ligase -
  ABZU09_RS04900 (ABZU09_04890) - 1045423..1045866 (+) 444 WP_006587663.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50104.83 Da        Isoelectric Point: 7.6940

>NTDB_id=1017919 ABZU09_RS04870 WP_006585828.1 1039512..1040888(+) (radA) [Lactobacillus mulieris strain 294_F1_4-2]
MAKAQTRYKCRSCGYISASYLGRCPNCGSWNQFEKEVQEVRKASTKQTPSRLMPTTGLHEPVTLEKVKAEKETRIPTKFS
ELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIMSTLASEHKVLYVSGEESASQIKLRADRLGVGNSGMYLYPETNMSNI
RDQISDLKPDFVVIDSIQTMNEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDERLPNSTGSCVVVSLEGTRPILAEVQALVAPTA
FGYAKRTTSGIDYNKAALLLAVLEKRGNLMLQNQDAYLTTTGGIKLTEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGL
TGEVRRVNKIESRIAEAEKIGFKRIFIPKFNMKASFSKRKIEVVPVSTVAQALKLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1017919 ABZU09_RS04870 WP_006585828.1 1039512..1040888(+) (radA) [Lactobacillus mulieris strain 294_F1_4-2]
ATGGCAAAAGCACAAACAAGATACAAGTGTCGTTCATGCGGCTATATTTCAGCTTCTTATTTGGGAAGATGTCCTAATTG
TGGATCTTGGAACCAATTTGAAAAGGAAGTCCAAGAAGTGCGAAAAGCTAGTACTAAGCAGACCCCTAGTCGCTTAATGC
CTACAACAGGCTTGCATGAACCTGTAACTTTAGAAAAGGTAAAAGCTGAAAAAGAAACACGTATTCCGACAAAATTTAGT
GAATTAAATAGAGTATTGGGTGGAGGAATAGTTACTGGTTCACTTGTTTTAATTGGCGGTGACCCGGGAATTGGTAAGTC
AACCCTGATGCTTCAAATTATGAGTACATTGGCAAGTGAGCATAAAGTATTATATGTTTCCGGTGAAGAATCAGCTAGTC
AGATTAAGCTACGAGCAGATCGCTTGGGTGTGGGAAATAGTGGAATGTATCTCTACCCTGAAACTAATATGAGCAACATT
CGTGATCAAATTAGTGATTTGAAACCAGATTTTGTGGTAATCGACTCAATTCAGACAATGAATGAACCGAGCCTTGATTC
GATGGTGGGGTCAGCAGCGCAAGTTAGAGAAGTTACTAGTGAATTAATGCATATCGCAAAGATTGATCAAATTACGGTAT
TTATTATTGGTCACGTAACTAAGGAAGGTGCAATTGCTGGACCAAAAATATTGGAACACATGGTTGATACTGTGCTGTAT
TTTGAAGGAGATGAGCATCATGCTTATCGAATCTTGCATTCAGTAAAGAACAGATTTGGCGCTGCTAATGAAATTGGAAT
GTTTGAAATGGAAAATTCAGGACTCAAAGAAGTTACGAATCCATCTTCAATTTTTTTAGATGAGCGTTTGCCTAACTCTA
CGGGATCATGTGTAGTTGTATCACTTGAAGGAACTAGGCCTATTTTAGCTGAAGTGCAAGCGTTAGTTGCCCCTACAGCA
TTTGGTTATGCTAAAAGAACTACCAGTGGGATTGACTATAATAAGGCAGCCTTGTTACTAGCGGTTTTAGAAAAAAGGGG
AAACTTGATGTTACAAAACCAAGATGCCTATTTAACTACGACTGGTGGAATAAAATTAACTGAACCAGCAATTGATTTGG
CAATTGTTATGGCGATTGGTTCAAGTTATAAAGATATGGAAATCCCATCTGAAGACTGCTTTGTTGGAGAAGTTGGGCTA
ACTGGTGAGGTGCGAAGAGTTAATAAGATTGAATCTAGAATCGCTGAGGCTGAAAAAATTGGCTTTAAGAGAATTTTTAT
TCCCAAATTTAATATGAAGGCAAGTTTTTCGAAGCGAAAAATTGAAGTAGTACCTGTTTCAACAGTGGCTCAAGCTTTAA
AATTAGTTTTTGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

57.987

99.782

0.579
  radA Streptococcus pneumoniae Rx1

57.987

99.782

0.579
  radA Streptococcus pneumoniae D39

57.987

99.782

0.579
  radA Streptococcus pneumoniae R6

57.987

99.782

0.579
  radA Streptococcus pneumoniae TIGR4

57.987

99.782

0.579
  radA Streptococcus mitis SK321

57.987

99.782

0.579
  radA Bacillus subtilis subsp. subtilis str. 168

54.466

100

0.546

Multiple sequence alignment