Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABZU09_RS02505 Genome accession   NZ_CP160090
Coordinates   548465..550252 (+) Length   595 a.a.
NCBI ID   WP_006586248.1    Uniprot ID   A0AAP3GWE9
Organism   Lactobacillus mulieris strain 294_F1_4-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 543465..555252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU09_RS02490 (ABZU09_02490) - 544387..545244 (+) 858 WP_022091102.1 IS982-like element ISLh1 family transposase -
  ABZU09_RS02495 (ABZU09_02495) - 545473..547038 (+) 1566 WP_006586250.1 multicopper oxidase family protein -
  ABZU09_RS02500 (ABZU09_02500) - 547088..548296 (-) 1209 WP_006586249.1 LCP family protein -
  ABZU09_RS02505 (ABZU09_02505) pepF 548465..550252 (+) 1788 WP_006586248.1 oligoendopeptidase F Regulator
  ABZU09_RS02510 (ABZU09_02510) - 550340..551863 (-) 1524 WP_006586247.1 L-lactate permease -
  ABZU09_RS02515 (ABZU09_02515) - 551962..553485 (-) 1524 WP_006587591.1 L-lactate permease -
  ABZU09_RS02520 (ABZU09_02520) - 553607..554398 (-) 792 WP_006587590.1 metal ABC transporter permease -
  ABZU09_RS02525 (ABZU09_02525) - 554398..555054 (-) 657 WP_006586244.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67609.84 Da        Isoelectric Point: 5.1934

>NTDB_id=1017913 ABZU09_RS02505 WP_006586248.1 548465..550252(+) (pepF) [Lactobacillus mulieris strain 294_F1_4-2]
MVLPTRNEVPKELTWDLTRVFPTDQAWQKEFESVSNEISNLNNLSAIITKSGNDLYSALTQIFSIDRRLEKIYVYATMSR
DVDTSNNHYLGFAAMAEDLANKYSSAISFINPAILSLSNQVLKEFELQEPKLLNYKHYLDQITNKRNHTLDAQSEQIIAA
SGAALGSSSNTFNVLTNSDLEFGYTTDNDGEMVQLTEGLYSQLIQSPKRTVRKNAFETLYASYGQFQNTLASTLSGNVKS
QNYVALMHGYNSAREAALAQSHIPVSVYDNLIKGVHKHLNLLHRYMKLRKKVLGLEELEMYDLYVPITGTPSLSYSYSES
KKQAREALSILGKEYLDQVDYIFNNRVIDVVESKGKVTGAYSGGSYDTDPYELLNWTNDFDALYTLVHETGHSVHSAFTR
KNQPYIYGEYPIFLAEIASTTNENILTEYLLSKATDPKIRAFILNYNLEAFRTTLYRQTQFAEFEQFIHEADQSGEPLTA
EKLNSFYGELNQKYYGIVEPGSDIDKEWSRIPHFYYNFYVYQYSTGFAAAVALAKNIVHGTEKQKADYLAFLKAGSSEYP
IEIMKKAGVDMTTSTYLDSAFSVFEQRLNELEKLL

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1017913 ABZU09_RS02505 WP_006586248.1 548465..550252(+) (pepF) [Lactobacillus mulieris strain 294_F1_4-2]
ATGGTATTACCTACAAGAAATGAAGTCCCCAAAGAGTTGACTTGGGATTTAACACGAGTTTTTCCTACTGATCAAGCTTG
GCAAAAAGAATTTGAGTCAGTAAGCAATGAAATTTCCAATCTAAATAACTTGAGTGCCATCATTACTAAATCTGGTAATG
ATTTATATTCAGCATTAACCCAAATTTTTTCAATTGATCGCCGTCTAGAAAAAATTTATGTTTATGCCACGATGTCTAGA
GATGTTGATACTAGCAATAATCATTATTTAGGTTTTGCCGCAATGGCAGAAGATTTGGCAAATAAATATAGCTCAGCTAT
TAGCTTCATTAATCCAGCTATTTTATCTTTAAGCAATCAAGTCTTAAAAGAATTTGAGCTACAAGAACCTAAATTATTAA
ATTACAAACACTATTTAGATCAGATTACTAATAAAAGAAATCATACTCTAGATGCGCAATCTGAACAAATTATTGCTGCA
AGTGGTGCTGCTCTTGGTTCATCAAGTAATACTTTTAATGTGCTAACCAATTCAGATCTTGAATTTGGTTATACAACTGA
CAATGATGGCGAGATGGTTCAATTAACTGAAGGATTATATAGTCAGCTTATCCAATCACCAAAAAGAACCGTCAGAAAAA
ATGCTTTCGAAACTCTTTATGCAAGCTATGGTCAATTTCAAAATACACTTGCTTCAACTCTTTCAGGCAATGTTAAATCA
CAAAATTATGTTGCATTAATGCATGGTTACAATAGTGCGCGCGAAGCAGCTTTAGCACAAAGTCACATCCCTGTTTCCGT
TTACGATAACTTAATTAAAGGGGTTCATAAACATCTCAATTTACTCCACCGTTATATGAAATTAAGAAAAAAAGTTTTGG
GATTAGAAGAACTAGAAATGTATGATCTCTATGTTCCAATTACAGGAACCCCATCTTTATCCTATAGCTATAGTGAATCG
AAAAAGCAAGCACGAGAGGCATTAAGTATTTTAGGGAAAGAATACCTTGATCAAGTTGATTATATTTTTAATAATCGAGT
AATTGATGTTGTGGAATCTAAGGGAAAAGTAACTGGAGCATATTCAGGTGGTAGTTATGATACAGATCCTTATGAATTGC
TTAATTGGACTAATGACTTTGATGCTCTTTATACTTTAGTTCACGAAACGGGCCATTCTGTACATTCTGCTTTCACTAGA
AAAAATCAACCTTATATCTATGGCGAATACCCTATCTTCTTAGCAGAAATAGCATCAACTACCAATGAAAACATTCTAAC
TGAATATTTATTAAGTAAAGCAACTGATCCTAAAATTAGAGCATTTATTCTTAACTACAATTTAGAAGCATTCAGAACTA
CCCTTTATCGCCAAACTCAATTTGCTGAATTTGAACAATTTATTCATGAGGCAGATCAAAGCGGAGAACCACTAACAGCT
GAAAAATTGAATTCTTTTTATGGTGAATTAAATCAAAAATATTATGGAATCGTAGAGCCTGGCAGTGATATCGATAAAGA
ATGGTCAAGAATTCCTCACTTTTATTACAATTTTTATGTATATCAATATTCTACGGGATTCGCTGCAGCGGTTGCTTTAG
CTAAGAATATCGTTCATGGCACAGAAAAACAAAAAGCAGACTATCTAGCATTTTTAAAAGCAGGTTCAAGTGAATATCCT
ATTGAGATTATGAAAAAAGCTGGTGTCGATATGACAACGTCAACTTATCTTGACAGTGCCTTTTCAGTCTTTGAGCAGCG
CTTAAACGAACTAGAAAAATTACTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-581)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.777

99.328

0.514

Multiple sequence alignment