Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   DQM36_RS05840 Genome accession   NZ_LS483332
Coordinates   1131064..1131852 (+) Length   262 a.a.
NCBI ID   WP_014411883.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12696     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126064..1136852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS05785 (NCTC12696_01139) - 1126494..1126808 (-) 315 WP_014411879.1 helix-turn-helix domain-containing protein -
  DQM36_RS09860 (NCTC12696_01140) - 1126824..1126958 (-) 135 WP_012560975.1 hypothetical protein -
  DQM36_RS05790 (NCTC12696_01141) - 1126960..1127271 (-) 312 WP_014411880.1 hypothetical protein -
  DQM36_RS05795 (NCTC12696_01142) - 1127349..1127534 (-) 186 WP_011054585.1 helix-turn-helix domain-containing protein -
  DQM36_RS05800 (NCTC12696_01143) - 1127701..1127940 (+) 240 WP_011284879.1 hypothetical protein -
  DQM36_RS05805 (NCTC12696_01144) - 1128091..1128300 (+) 210 WP_002984292.1 hypothetical protein -
  DQM36_RS05815 (NCTC12696_01146) - 1128553..1129359 (+) 807 WP_011285629.1 TIGR02391 family protein -
  DQM36_RS05825 (NCTC12696_01148) - 1129571..1129810 (-) 240 WP_014411882.1 helix-turn-helix domain-containing protein -
  DQM36_RS05830 (NCTC12696_01149) - 1129904..1130503 (+) 600 WP_011284882.1 hypothetical protein -
  DQM36_RS05835 (NCTC12696_01150) - 1130533..1130691 (-) 159 WP_011285583.1 hypothetical protein -
  DQM36_RS05840 (NCTC12696_01152) irvR 1131064..1131852 (+) 789 WP_014411883.1 S24 family peptidase Regulator
  DQM36_RS05845 (NCTC12696_01153) - 1131862..1132167 (+) 306 WP_011106738.1 membrane protein -
  DQM36_RS05850 (NCTC12696_01154) - 1132290..1133432 (+) 1143 WP_003051793.1 tyrosine-type recombinase/integrase -
  DQM36_RS05855 (NCTC12696_01155) - 1133522..1133797 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  DQM36_RS05860 (NCTC12696_01156) - 1133896..1134483 (-) 588 WP_002989129.1 YpmS family protein -
  DQM36_RS05865 (NCTC12696_01157) - 1134461..1135303 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  DQM36_RS05870 (NCTC12696_01158) - 1135296..1136135 (-) 840 WP_002989125.1 DegV family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 30009.16 Da        Isoelectric Point: 8.1141

>NTDB_id=1017891 DQM36_RS05840 WP_014411883.1 1131064..1131852(+) (irvR) [Streptococcus pyogenes strain NCTC12696]
MARGRGKLTPQDEEYKKIISAKISSLLLENNLKQGHLADALEIPRSSFNEYVKGNSLPNPGNVQKIADYFGLMKSDIDPR
FAPRKKNHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATEQLKEQKNKITSIEKKLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYEGGIYAVEWDGQTYIKKVYREKDGLRLVSLNKKYNDKF
APFSEGPRIIGEIVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1017891 DQM36_RS05840 WP_014411883.1 1131064..1131852(+) (irvR) [Streptococcus pyogenes strain NCTC12696]
ATGGCAAGAGGACGAGGGAAATTAACACCTCAAGACGAGGAATACAAAAAGATAATTTCTGCTAAAATTAGCAGTTTATT
GCTAGAAAACAATTTAAAACAAGGACATTTAGCTGATGCATTGGAAATTCCACGAAGTAGTTTTAATGAATATGTCAAAG
GAAATTCCTTACCTAATCCTGGTAACGTTCAAAAGATAGCTGATTATTTCGGGTTAATGAAGTCTGATATAGATCCTAGA
TTTGCACCTCGTAAGAAAAATCACGAACTCAAAATCCCTACTTCTCCACTTGTCAAAAAAATAACCACAACAGTCGTAGA
ATTAAATGTTCCTCGTAAGCAAAAAGTTTTAGACTTTGCAACAGAACAATTGAAAGAGCAAAAAAATAAAATTACTTCAA
TAGAGAAAAAACTATATGAATACAAAGTCTATGAGAAACTTTCCGCAGGTACAGGTTATGGATATTTTGGTGATGGGAAC
TATGATACTGTTTTTTACGACGAAGAATTAGATTACGATTTTGCCTCTTGGGTTTTTGGTGATTCTATGGAACCAACTTA
TCTGAATGGTGAGGTTGTGCTTATAAAACAAACTGGCTTTGATTATGAAGGTGGCATCTATGCCGTAGAGTGGGACGGAC
AAACCTATATTAAGAAAGTTTACAGAGAAAAGGATGGCTTGCGCCTTGTGTCTTTAAATAAAAAATACAATGACAAGTTT
GCTCCTTTTAGTGAAGGCCCTCGTATAATAGGGGAAATTGTCGGTAACTTTATGCCTAAAGAGTACTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(168-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

38.158

100

0.443