Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABZU12_RS02570 Genome accession   NZ_CP160088
Coordinates   524851..526638 (-) Length   595 a.a.
NCBI ID   WP_006586248.1    Uniprot ID   A0AAP3GWE9
Organism   Lactobacillus mulieris strain CM2267_MRS1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 519851..531638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU12_RS02550 (ABZU12_02550) - 520049..520705 (+) 657 WP_391486864.1 metal ABC transporter ATP-binding protein -
  ABZU12_RS02555 (ABZU12_02555) - 520705..521496 (+) 792 WP_006587590.1 metal ABC transporter permease -
  ABZU12_RS02560 (ABZU12_02560) - 521618..523141 (+) 1524 WP_048595763.1 L-lactate permease -
  ABZU12_RS02565 (ABZU12_02565) - 523240..524763 (+) 1524 WP_006586247.1 L-lactate permease -
  ABZU12_RS02570 (ABZU12_02570) pepF 524851..526638 (-) 1788 WP_006586248.1 oligoendopeptidase F Regulator
  ABZU12_RS02575 (ABZU12_02575) - 526807..528015 (+) 1209 WP_391486865.1 LCP family protein -
  ABZU12_RS02580 (ABZU12_02580) - 528065..529630 (-) 1566 WP_006586250.1 multicopper oxidase family protein -
  ABZU12_RS02585 (ABZU12_02585) - 529868..530374 (+) 507 WP_006586251.1 hypothetical protein -
  ABZU12_RS02590 (ABZU12_02590) - 530448..531074 (+) 627 WP_006587594.1 LVIS_2131 family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67609.84 Da        Isoelectric Point: 5.1934

>NTDB_id=1017882 ABZU12_RS02570 WP_006586248.1 524851..526638(-) (pepF) [Lactobacillus mulieris strain CM2267_MRS1]
MVLPTRNEVPKELTWDLTRVFPTDQAWQKEFESVSNEISNLNNLSAIITKSGNDLYSALTQIFSIDRRLEKIYVYATMSR
DVDTSNNHYLGFAAMAEDLANKYSSAISFINPAILSLSNQVLKEFELQEPKLLNYKHYLDQITNKRNHTLDAQSEQIIAA
SGAALGSSSNTFNVLTNSDLEFGYTTDNDGEMVQLTEGLYSQLIQSPKRTVRKNAFETLYASYGQFQNTLASTLSGNVKS
QNYVALMHGYNSAREAALAQSHIPVSVYDNLIKGVHKHLNLLHRYMKLRKKVLGLEELEMYDLYVPITGTPSLSYSYSES
KKQAREALSILGKEYLDQVDYIFNNRVIDVVESKGKVTGAYSGGSYDTDPYELLNWTNDFDALYTLVHETGHSVHSAFTR
KNQPYIYGEYPIFLAEIASTTNENILTEYLLSKATDPKIRAFILNYNLEAFRTTLYRQTQFAEFEQFIHEADQSGEPLTA
EKLNSFYGELNQKYYGIVEPGSDIDKEWSRIPHFYYNFYVYQYSTGFAAAVALAKNIVHGTEKQKADYLAFLKAGSSEYP
IEIMKKAGVDMTTSTYLDSAFSVFEQRLNELEKLL

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1017882 ABZU12_RS02570 WP_006586248.1 524851..526638(-) (pepF) [Lactobacillus mulieris strain CM2267_MRS1]
ATGGTATTACCTACAAGAAATGAAGTCCCCAAAGAGTTGACTTGGGATTTAACACGAGTTTTTCCTACTGATCAAGCTTG
GCAAAAAGAATTTGAGTCAGTAAGCAATGAAATTTCCAATCTAAATAACTTGAGTGCCATCATTACTAAATCTGGTAATG
ATTTATATTCAGCATTAACCCAAATTTTTTCAATTGATCGCCGTCTAGAAAAAATTTATGTTTATGCCACGATGTCTAGA
GATGTTGATACTAGCAATAATCATTATTTAGGTTTTGCCGCAATGGCAGAAGATTTGGCAAATAAATATAGCTCAGCTAT
TAGCTTCATTAATCCAGCTATTTTATCTTTAAGCAATCAAGTCTTAAAAGAATTTGAGCTACAAGAACCTAAATTATTAA
ATTACAAACACTATTTAGATCAGATTACTAATAAAAGAAATCATACTCTAGATGCGCAATCTGAACAAATTATTGCTGCA
AGTGGTGCTGCTCTTGGTTCATCAAGTAATACTTTTAATGTGCTAACCAATTCAGATCTTGAATTTGGTTATACAACTGA
CAATGATGGCGAGATGGTTCAATTAACTGAAGGATTATATAGTCAGCTTATCCAATCACCAAAAAGAACCGTCAGAAAAA
ATGCTTTCGAAACTCTTTATGCAAGCTATGGTCAATTTCAAAATACACTTGCTTCAACTCTTTCAGGCAATGTTAAATCA
CAAAATTATGTTGCATTAATGCATGGTTACAATAGTGCGCGCGAAGCAGCTTTAGCACAAAGTCACATCCCTGTTTCCGT
TTACGATAACTTAATTAAAGGGGTTCATAAACATCTCAATTTACTCCACCGTTATATGAAATTAAGAAAAAAAGTTTTGG
GATTAGAAGAACTAGAAATGTATGATCTCTATGTTCCAATTACAGGAACCCCATCTTTATCCTATAGCTATAGTGAATCG
AAAAAGCAAGCACGAGAGGCATTAAGTATTTTAGGGAAAGAATACCTTGATCAAGTTGATTATATTTTTAATAATCGAGT
AATTGATGTTGTGGAATCTAAGGGAAAAGTAACTGGAGCATATTCAGGTGGTAGTTATGATACAGATCCTTATGAATTGC
TTAATTGGACTAATGACTTTGATGCTCTTTATACTTTAGTTCACGAAACGGGCCATTCTGTACATTCTGCTTTCACTAGA
AAAAATCAACCTTATATCTATGGCGAATACCCTATCTTCTTAGCAGAAATAGCATCAACTACCAATGAAAACATTCTAAC
TGAATATTTATTAAGTAAAGCAACTGATCCTAAAATTAGAGCATTTATTCTTAACTACAATTTAGAAGCATTCAGAACTA
CCCTTTATCGCCAAACTCAATTTGCTGAATTTGAACAATTTATTCATGAGGCAGATCAAAGCGGAGAACCACTAACAGCT
GAAAAATTGAATTCTTTTTATGGTGAATTAAATCAAAAATATTATGGAATCGTAGAGCCTGGCAGTGATATCGATAAAGA
ATGGTCAAGAATTCCTCACTTTTATTACAATTTTTATGTATATCAATATTCTACGGGATTCGCTGCAGCGGTTGCTTTAG
CTAAGAATATCGTTCATGGCACAGAAAAACAAAAAGCAGACTATCTAGCATTTTTAAAAGCAGGTTCAAGTGAATATCCT
ATTGAGATTATGAAAAAAGCTGGTGTCGATATGACAACGTCAACTTATCTTGACAGTGCCTTTTCAGTCTTTGAGCAGCG
CTTAAACGAACTAGAAAAATTACTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-581)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.777

99.328

0.514

Multiple sequence alignment