Detailed information NTG1017876

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ABZU12_RS00305
• Genome accession: NZ_CP160088
• Coordinates: 49806..51182 (-)
• Length: 458 a.a.
• NCBI ID: WP_006585828.1
• Uniprot ID: A0AAP3GY35
• Organism: Lactobacillus mulieris strain CM2267_MRS1
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	51962..53140	49806..51182	flank	780

Gene organization within MGE regions

Location: 49806..53140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZU12_RS00305 (ABZU12_00305)	radA	49806..51182 (-)	1377	WP_006585828.1	DNA repair protein RadA	Machinery gene
ABZU12_RS00310 (ABZU12_00310)	-	51196..51735 (-)	540	WP_006585829.1	dUTP diphosphatase	-
ABZU12_RS00315 (ABZU12_00315)	-	51962..53140 (-)	1179	WP_006587734.1	IS256 family transposase	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50104.83 Da
• Isoelectric Point: 7.6940

>NTDB_id=1017876 ABZU12_RS00305 WP_006585828.1 49806..51182(-) (radA) [Lactobacillus mulieris strain CM2267_MRS1]
MAKAQTRYKCRSCGYISASYLGRCPNCGSWNQFEKEVQEVRKASTKQTPSRLMPTTGLHEPVTLEKVKAEKETRIPTKFS
ELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIMSTLASEHKVLYVSGEESASQIKLRADRLGVGNSGMYLYPETNMSNI
RDQISDLKPDFVVIDSIQTMNEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDERLPNSTGSCVVVSLEGTRPILAEVQALVAPTA
FGYAKRTTSGIDYNKAALLLAVLEKRGNLMLQNQDAYLTTTGGIKLTEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGL
TGEVRRVNKIESRIAEAEKIGFKRIFIPKFNMKASFSKRKIEVVPVSTVAQALKLVFG

Nucleotide

• Length: 1377 bp

>NTDB_id=1017876 ABZU12_RS00305 WP_006585828.1 49806..51182(-) (radA) [Lactobacillus mulieris strain CM2267_MRS1]
ATGGCAAAAGCACAAACAAGATACAAGTGTCGTTCATGCGGCTATATTTCAGCTTCTTATTTGGGAAGATGTCCTAATTG
TGGATCTTGGAACCAATTTGAAAAGGAAGTCCAAGAAGTGCGAAAAGCTAGTACTAAGCAGACCCCTAGTCGCTTAATGC
CTACAACAGGCTTGCATGAACCTGTAACTTTAGAAAAGGTAAAAGCTGAAAAAGAAACACGTATTCCGACAAAATTTAGT
GAATTAAATAGAGTATTGGGTGGAGGAATAGTTACTGGTTCACTTGTTTTAATTGGCGGTGACCCGGGAATTGGTAAGTC
AACCCTGATGCTTCAAATTATGAGTACATTGGCAAGTGAGCATAAAGTATTATATGTTTCCGGTGAAGAATCAGCTAGTC
AGATTAAGCTACGAGCAGATCGCTTGGGTGTGGGAAATAGTGGAATGTATCTCTACCCTGAAACTAATATGAGCAACATT
CGTGATCAAATTAGTGATTTGAAACCAGATTTTGTGGTAATCGACTCAATTCAGACAATGAATGAACCGAGCCTTGATTC
GATGGTGGGGTCAGCAGCGCAAGTTAGAGAAGTTACTAGTGAATTAATGCATATCGCAAAGATTGATCAAATTACGGTAT
TTATTATTGGTCACGTAACTAAGGAAGGTGCAATTGCTGGACCAAAAATATTGGAACACATGGTTGATACTGTGCTGTAT
TTTGAAGGAGATGAGCATCATGCTTATCGAATCTTGCATTCAGTAAAGAACAGATTTGGCGCTGCTAATGAAATTGGAAT
GTTTGAAATGGAAAATTCAGGACTCAAAGAAGTTACGAATCCATCTTCAATTTTTTTAGATGAGCGTTTGCCTAACTCTA
CGGGATCATGTGTAGTTGTATCACTTGAAGGAACTAGGCCTATTTTAGCTGAAGTGCAAGCGTTAGTTGCCCCTACAGCA
TTTGGTTATGCTAAAAGAACTACCAGTGGGATTGACTATAATAAGGCAGCCTTGTTACTAGCGGTTTTAGAAAAAAGGGG
AAACTTGATGTTACAAAACCAAGATGCCTATTTAACTACGACTGGTGGAATAAAATTAACTGAACCAGCAATTGATTTGG
CAATTGTTATGGCGATTGGTTCAAGTTATAAAGATATGGAAATCCCATCTGAAGACTGCTTTGTTGGAGAAGTTGGGCTA
ACTGGTGAGGTGCGAAGAGTTAATAAGATTGAATCTAGAATCGCTGAGGCTGAAAAAATTGGCTTTAAGAGAATTTTTAT
TCCCAAATTTAATATGAAGGCAAGTTTTTCGAAGCGAAAAATTGAAGTAGTACCTGTTTCAACAGTGGCTCAAGCTTTAA
AATTAGTTTTTGGCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-223)

• Subunit ChlI of Mg-chelatase (ChlI) (367-431)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	57.987	99.782	0.579
radA	Streptococcus pneumoniae Rx1	57.987	99.782	0.579
radA	Streptococcus pneumoniae D39	57.987	99.782	0.579
radA	Streptococcus pneumoniae R6	57.987	99.782	0.579
radA	Streptococcus pneumoniae TIGR4	57.987	99.782	0.579
radA	Streptococcus mitis SK321	57.987	99.782	0.579
radA	Bacillus subtilis subsp. subtilis str. 168	54.466	100	0.546