Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABZU20_RS02560 Genome accession   NZ_CP160087
Coordinates   537948..539735 (+) Length   595 a.a.
NCBI ID   WP_006587781.1    Uniprot ID   A0A5N1IH24
Organism   Lactobacillus jensenii strain 0422_293_1_1_MRS1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 532948..544735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU20_RS02540 (ABZU20_02535) - 533507..534145 (-) 639 WP_006585613.1 LVIS_2131 family protein -
  ABZU20_RS02545 (ABZU20_02540) - 534220..534717 (-) 498 WP_006585612.1 hypothetical protein -
  ABZU20_RS02550 (ABZU20_02545) - 534955..536520 (+) 1566 WP_006587782.1 multicopper oxidase family protein -
  ABZU20_RS02555 (ABZU20_02550) - 536571..537779 (-) 1209 WP_006585611.1 LCP family protein -
  ABZU20_RS02560 (ABZU20_02555) pepF 537948..539735 (+) 1788 WP_006587781.1 oligoendopeptidase F Regulator
  ABZU20_RS02565 (ABZU20_02560) - 539809..541332 (-) 1524 WP_006588764.1 L-lactate permease -
  ABZU20_RS02570 (ABZU20_02565) - 541429..542952 (-) 1524 WP_006588763.1 L-lactate permease -
  ABZU20_RS02575 (ABZU20_02570) - 543075..543866 (-) 792 WP_006585609.1 metal ABC transporter permease -
  ABZU20_RS02580 (ABZU20_02575) - 543866..544522 (-) 657 WP_240404406.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67769.86 Da        Isoelectric Point: 5.2733

>NTDB_id=1017865 ABZU20_RS02560 WP_006587781.1 537948..539735(+) (pepF) [Lactobacillus jensenii strain 0422_293_1_1_MRS1]
MVLPTRNEVPKELTWDLTRVFPNDQAWQKEFKSVSNEIDKLSSLSTIITKSGSDLYSALTQIFSIDRRLEKVYVYATMSR
DVDTSNNHYLGFAAMAEDLANKYSSVISFVNPAILSLSDQNLKKFELQEPKLAHYKHYLDQITNKRQHTLDAQAEQIIAA
SGAALNSSSNTYNVLTNSDMEFGYTTDNDGEMVQLSEGLYSQLIQSPQRSVRQNAFETLYASYGQFQNTLASTLSGNVKA
QNYAALMHGYANAKEASLSQNNIPVSVYDNLVNGVHKHLDLLHRYMKLRKKVLGLQNLEMYDLYVPITGTPSLRYSYKEA
KDQAREALSILGKEYLDQVDYIFNNRVIDVVESKSKVTGAYSGGSYDTDPYELLNWTNDFDALYTLVHETGHSVHSAFTR
KNQPYVYGEYPIFLAEIASTTNENILTEYLLSKTTDPKIRAFILNYNLEAFRTTLYRQTQFAEFEQFIHEADQNGEPLTA
ERLNTFYGELNQKYYGIVEPGSDIDKEWARIPHFYYNFYVYQYSTGFAAAVALAKNIVHGTDKQKTDYLNFLKAGSSEYP
IDIMKKAGVDMTTSAYLDSAFSVFEQRLNELEKLL

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1017865 ABZU20_RS02560 WP_006587781.1 537948..539735(+) (pepF) [Lactobacillus jensenii strain 0422_293_1_1_MRS1]
ATGGTATTACCCACAAGAAATGAGGTCCCAAAAGAATTAACTTGGGATTTAACAAGAGTTTTTCCAAATGATCAAGCCTG
GCAAAAAGAATTTAAATCAGTAAGCAATGAAATTGATAAATTAAGCAGCTTAAGCACCATTATTACTAAGTCAGGTAGTG
ATTTATATTCTGCTTTAACCCAAATCTTTTCAATTGATCGCCGACTTGAGAAAGTTTACGTATATGCCACAATGTCTAGA
GATGTTGACACTAGTAATAACCACTATTTAGGTTTTGCTGCAATGGCTGAAGACTTAGCTAATAAATATAGCTCCGTAAT
CAGTTTTGTTAATCCAGCAATTTTATCTCTAAGTGATCAAAATCTTAAAAAATTTGAATTGCAAGAACCTAAATTGGCAC
ATTATAAGCATTACTTAGACCAAATTACCAACAAGCGTCAACACACTTTAGATGCACAAGCAGAACAAATTATTGCTGCA
AGTGGAGCGGCTCTTAACTCATCAAGTAACACTTATAATGTTCTAACAAATTCAGATATGGAATTTGGTTATACAACTGA
TAATGATGGAGAAATGGTTCAATTATCTGAAGGCTTATATAGTCAACTTATCCAATCACCTCAAAGATCTGTTAGACAAA
ATGCTTTTGAAACTCTTTATGCAAGTTATGGTCAATTTCAAAATACACTTGCTTCAACTCTCTCGGGTAATGTCAAAGCC
CAAAATTATGCTGCATTAATGCATGGTTATGCTAATGCAAAAGAGGCTTCTTTATCGCAAAACAATATCCCCGTTTCTGT
TTACGATAACTTAGTTAATGGGGTTCACAAGCACCTCGATTTACTTCACCGCTACATGAAATTAAGAAAAAAAGTTTTGG
GACTACAAAACCTTGAAATGTATGACCTATACGTTCCAATTACTGGAACTCCATCTTTAAGATATAGTTATAAAGAGGCT
AAAGATCAAGCACGAGAAGCATTGAGTATTTTAGGGAAAGAATATCTTGATCAGGTAGATTATATTTTCAATAATCGTGT
AATTGATGTTGTAGAATCTAAAAGTAAAGTTACCGGCGCATACTCTGGGGGAAGCTATGATACTGATCCGTATGAATTGC
TTAACTGGACGAATGATTTCGATGCACTTTACACCTTAGTTCATGAAACCGGGCATTCTGTCCATTCTGCATTTACCAGA
AAAAATCAACCTTATGTTTATGGTGAATATCCTATCTTCTTAGCAGAAATAGCTTCAACTACTAATGAAAACATTCTAAC
TGAATACTTACTAAGTAAGACAACTGATCCAAAAATTAGAGCGTTCATTCTTAATTACAACTTAGAGGCATTCAGAACTA
CACTTTATCGTCAGACTCAATTTGCTGAATTTGAACAATTTATCCATGAAGCAGATCAAAATGGCGAACCATTAACCGCA
GAAAGATTGAATACCTTTTATGGTGAACTAAATCAAAAATATTATGGGATTGTAGAACCTGGCAGTGATATTGACAAAGA
ATGGGCTCGAATTCCGCATTTTTATTATAATTTTTATGTATATCAATATTCTACTGGTTTCGCCGCAGCCGTTGCTTTAG
CAAAAAATATCGTTCATGGTACCGATAAACAAAAAACAGACTATCTAAACTTCTTAAAAGCAGGGTCAAGCGAATATCCT
ATTGATATTATGAAAAAAGCCGGTGTTGATATGACAACATCAGCTTATCTTGATAGTGCCTTTTCAGTATTTGAACAACG
CTTAAACGAATTAGAAAAATTACTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N1IH24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.577

99.328

0.492

Multiple sequence alignment