Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZU04_RS04775 Genome accession   NZ_CP160084
Coordinates   1018746..1020122 (-) Length   458 a.a.
NCBI ID   WP_391486770.1    Uniprot ID   -
Organism   Lactobacillus jensenii strain 188_F1_4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013746..1025122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU04_RS04755 (ABZU04_04755) rlmB 1014017..1014772 (-) 756 WP_006585158.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABZU04_RS04760 (ABZU04_04760) - 1014759..1015202 (-) 444 WP_006585159.1 Mini-ribonuclease 3 -
  ABZU04_RS04765 (ABZU04_04765) cysS 1015195..1016616 (-) 1422 WP_006588250.1 cysteine--tRNA ligase -
  ABZU04_RS04770 (ABZU04_04770) gltX 1017172..1018671 (-) 1500 WP_006585161.1 glutamate--tRNA ligase -
  ABZU04_RS04775 (ABZU04_04775) radA 1018746..1020122 (-) 1377 WP_391486770.1 DNA repair protein RadA Machinery gene
  ABZU04_RS04780 (ABZU04_04780) - 1020136..1020675 (-) 540 WP_006585163.1 dUTP diphosphatase -
  ABZU04_RS04785 (ABZU04_04785) - 1020775..1021065 (+) 291 WP_006585164.1 GNAT family N-acetyltransferase -
  ABZU04_RS04790 (ABZU04_04790) pepC 1021135..1022484 (+) 1350 WP_006588710.1 aminopeptidase C -
  ABZU04_RS04795 (ABZU04_04795) - 1022534..1023469 (-) 936 WP_006585165.1 AAA family ATPase -
  ABZU04_RS04800 (ABZU04_04800) - 1023554..1024231 (-) 678 WP_006588253.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ABZU04_RS04805 (ABZU04_04805) - 1024242..1024418 (-) 177 WP_075362434.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50091.75 Da        Isoelectric Point: 7.3992

>NTDB_id=1017818 ABZU04_RS04775 WP_391486770.1 1018746..1020122(-) (radA) [Lactobacillus jensenii strain 188_F1_4]
MAKAQTRYKCRSCGYISASYLGRCPNCGSWNQFEKEVQEVRKTSTKQTASRLMPTTGLHEPVTLEKVKAEKETRIPTKFS
ELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIMSTLANEHKVLYVSGEESASQIKLRANRLGVGDSGMYLYPETNMSNI
RDQISDLKPDFVVIDSIQTMNEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDERLPNSTGSCVVVSLEGTRPILAEVQALVAPTA
FGYAKRTTSGIDYNKAALLLAVLEKRGNLMLQNQDAYLTTTGGIKLSEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGL
TGEVRRVNKIESRIAEAEKIGFKRIFIPKFNMKASFANRKIEVVPVSTVAQALKLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1017818 ABZU04_RS04775 WP_391486770.1 1018746..1020122(-) (radA) [Lactobacillus jensenii strain 188_F1_4]
ATGGCAAAAGCACAAACAAGATATAAGTGTCGTTCATGTGGCTACATTTCAGCTTCATATCTAGGAAGATGTCCTAATTG
TGGCTCCTGGAACCAATTTGAAAAAGAAGTCCAAGAAGTGCGTAAGACTAGTACCAAGCAAACGGCTAGTCGTTTAATGC
CTACCACAGGCCTACATGAACCTGTAACTCTAGAAAAGGTAAAAGCTGAAAAGGAAACACGCATTCCAACTAAATTTAGT
GAACTAAATAGGGTTCTTGGTGGAGGAATTGTTACTGGTTCACTTGTTTTAATTGGTGGAGATCCAGGAATTGGTAAATC
AACATTAATGCTCCAAATTATGAGTACTTTGGCAAATGAGCATAAAGTATTATATGTTTCTGGTGAAGAATCGGCTAGCC
AAATCAAACTTAGGGCAAACCGTTTGGGTGTAGGAGATAGCGGCATGTATCTTTATCCTGAAACTAATATGAGTAACATT
CGTGATCAAATTAGTGATTTAAAGCCAGATTTTGTAGTAATTGATTCTATTCAGACAATGAATGAACCTAGTCTTGATTC
GATGGTTGGTTCAGCTGCGCAAGTTAGAGAAGTTACTAGTGAATTAATGCATATTGCTAAGATAGATCAAATCACAGTAT
TTATTATTGGACACGTGACTAAAGAAGGGGCAATTGCTGGGCCTAAGATTTTGGAACATATGGTTGACACTGTGCTCTAT
TTTGAAGGGGATGAGCATCATGCTTATCGAATTTTGCACTCAGTTAAAAATCGTTTTGGTGCAGCCAATGAAATTGGAAT
GTTTGAGATGGAAAATTCAGGATTAAAAGAAGTAACAAATCCATCTTCAATCTTCTTAGATGAGCGGTTACCTAATTCAA
CAGGGTCATGTGTAGTTGTATCACTTGAAGGAACTAGACCAATTTTAGCTGAAGTACAAGCTCTTGTAGCACCAACAGCC
TTTGGTTATGCTAAAAGGACGACCAGTGGAATTGATTATAATAAAGCAGCTTTGTTACTAGCAGTTTTAGAGAAAAGAGG
AAACTTGATGTTACAAAATCAAGATGCCTATTTAACTACGACTGGTGGGATAAAATTATCTGAGCCAGCGATTGATTTGG
CAATTGTCATGGCAATTGGTTCAAGTTATAAGGATATGGAAATTCCTTCTGAAGACTGTTTTGTTGGAGAAGTTGGCTTA
ACTGGTGAAGTACGACGTGTTAATAAAATTGAAAGCAGAATTGCTGAAGCTGAAAAAATTGGCTTTAAAAGAATTTTTAT
TCCTAAATTTAATATGAAGGCAAGTTTTGCAAATCGAAAAATTGAGGTCGTACCTGTTTCAACAGTAGCTCAAGCTTTAA
AGTTAGTTTTTGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

58.206

99.782

0.581
  radA Streptococcus pneumoniae D39

58.206

99.782

0.581
  radA Streptococcus pneumoniae R6

58.206

99.782

0.581
  radA Streptococcus pneumoniae TIGR4

58.206

99.782

0.581
  radA Streptococcus mitis NCTC 12261

58.206

99.782

0.581
  radA Streptococcus mitis SK321

58.206

99.782

0.581
  radA Bacillus subtilis subsp. subtilis str. 168

53.813

100

0.539

Multiple sequence alignment