Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABZT97_RS03305 Genome accession   NZ_CP160082
Coordinates   703411..705222 (-) Length   603 a.a.
NCBI ID   WP_077959485.1    Uniprot ID   -
Organism   Lactobacillus gasseri strain CM2267_MRS2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 698411..710222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZT97_RS03290 (ABZT97_03300) - 699067..700578 (+) 1512 WP_180374620.1 L-lactate permease -
  ABZT97_RS03295 (ABZT97_03305) - 700762..702303 (+) 1542 WP_077959486.1 hypothetical protein -
  ABZT97_RS03300 (ABZT97_03310) - 702480..703352 (+) 873 WP_102695813.1 Rpn family recombination-promoting nuclease/putative transposase -
  ABZT97_RS03305 (ABZT97_03315) pepF 703411..705222 (-) 1812 WP_077959485.1 oligoendopeptidase F Regulator
  ABZT97_RS03310 (ABZT97_03320) - 705386..706510 (+) 1125 WP_077959484.1 LCP family protein -
  ABZT97_RS03315 (ABZT97_03325) - 706615..706884 (-) 270 WP_077959483.1 hypothetical protein -
  ABZT97_RS03320 (ABZT97_03330) - 707108..707500 (+) 393 WP_003649972.1 hypothetical protein -
  ABZT97_RS03325 (ABZT97_03335) - 707509..709056 (+) 1548 WP_077959482.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABZT97_RS03330 (ABZT97_03340) - 709079..709861 (+) 783 WP_039157653.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68951.88 Da        Isoelectric Point: 4.7095

>NTDB_id=1017786 ABZT97_RS03305 WP_077959485.1 703411..705222(-) (pepF) [Lactobacillus gasseri strain CM2267_MRS2]
MALPTRNEVSDDLKWDLSRVFKNNQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KAEARKALAPLGEDYLKHVDYIFNNRVIDVVENQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTKADYLRDAFDTFEKRLNEFEKIVNELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1017786 ABZT97_RS03305 WP_077959485.1 703411..705222(-) (pepF) [Lactobacillus gasseri strain CM2267_MRS2]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACAATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTACGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGGCTATACTCACTTTTAATTCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTATGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGTGAGGTAAAAGCT
CACAATTTTAATGCTCGCGTACATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTGATCAAGGAAGTAAATAGCCACCTTGACTTACTTCACCGTTACGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTCCCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGCAGAAGCAAGAAAGGCTCTAGCACCATTAGGAGAAGACTATTTAAAACACGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAATCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTTCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGCGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGTTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATACTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCTC
TTGCTAATAAAGTTGTTCACGGCACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGCTCTTCAGATTAC
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTAATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.777

98.01

0.507

Multiple sequence alignment