Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZU06_RS02835 Genome accession   NZ_CP160081
Coordinates   606660..608039 (-) Length   459 a.a.
NCBI ID   WP_006733667.1    Uniprot ID   -
Organism   Lactobacillus iners strain E3_1733.1310.1_CBA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 601660..613039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU06_RS02810 (ABZU06_02810) - 601703..602248 (-) 546 WP_006730585.1 DNA-directed RNA polymerase sigma-70 factor -
  ABZU06_RS02815 (ABZU06_02815) rlmB 602361..603137 (-) 777 WP_006730544.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABZU06_RS02820 (ABZU06_02820) - 603118..603561 (-) 444 WP_391484383.1 Mini-ribonuclease 3 -
  ABZU06_RS02825 (ABZU06_02825) cysS 603548..604960 (-) 1413 WP_391484384.1 cysteine--tRNA ligase -
  ABZU06_RS02830 (ABZU06_02830) gltX 605081..606580 (-) 1500 WP_010221934.1 glutamate--tRNA ligase -
  ABZU06_RS02835 (ABZU06_02835) radA 606660..608039 (-) 1380 WP_006733667.1 DNA repair protein RadA Machinery gene
  ABZU06_RS02840 (ABZU06_02840) - 608039..608590 (-) 552 WP_006729453.1 hypothetical protein -
  ABZU06_RS02845 (ABZU06_02845) - 608738..610084 (+) 1347 WP_006738164.1 C1 family peptidase -
  ABZU06_RS02850 (ABZU06_02850) - 610125..611060 (-) 936 WP_006732426.1 AAA family ATPase -
  ABZU06_RS02855 (ABZU06_02855) - 611124..611801 (-) 678 WP_006732429.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ABZU06_RS02860 (ABZU06_02860) - 611803..612003 (-) 201 WP_006729449.1 hypothetical protein -
  ABZU06_RS02865 (ABZU06_02865) - 612006..612242 (-) 237 WP_006729448.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50386.22 Da        Isoelectric Point: 7.6768

>NTDB_id=1017768 ABZU06_RS02835 WP_006733667.1 606660..608039(-) (radA) [Lactobacillus iners strain E3_1733.1310.1_CBA1]
MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKLSEIDIKKQIRITTPFS
ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSISNAHKVLYVSGEESASQIKMRAERLHISDTELLLYSETNMENI
REQIVDLKPEFLVIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVVSLEGTRPILADIQALVTPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGL
TGEIRRINNIEARVKEAATRGFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1017768 ABZU06_RS02835 WP_006733667.1 606660..608039(-) (radA) [Lactobacillus iners strain E3_1733.1310.1_CBA1]
ATGGCAAAATTAAAAACTCAATATCGTTGTAAGAATTGCGATTATGTATCAGCTTCTTATTTAGGCCGTTGTCCAAATTG
CGGTGCATGGAATCAATTGGAAAAAGAGACGGAAGTTGCCAAAACTACTTCCAATCGGCTTACTGCTAGTAGATTAATTA
CTGCTATAGGTAATAATGAGCCTAAAAAATTAAGTGAGATAGATATTAAAAAGCAAATTCGTATTACTACTCCATTTTCT
GAATTAAATCGTGTGCTGGGTGGTGGAATAGTTCCTGGATCTTTAGTACTTGTTGGTGGTGATCCTGGTATAGGCAAATC
AACTTTAATGCTACAAATTATGGGGAGTATTTCCAATGCTCACAAGGTTTTATATGTTTCAGGTGAGGAATCTGCAAGTC
AAATTAAAATGCGTGCAGAAAGGCTACATATTAGTGATACAGAATTACTTTTATATTCTGAAACTAATATGGAAAATATT
CGCGAACAGATAGTTGATCTTAAGCCGGAATTTTTGGTCATCGATTCAATTCAGACAATGAATGAGCCATCGCAAGATTC
GATGGTAGGATCTGCTACTCAAGTTAGAGAAGTGACAGCGGAATTACTTAAAATTGCTAAAATTGATAAGATAACAGTTT
TTGTTATTGGCCATGTGACCAAAGAAGGTGCTATTGCTGGACCTAAAATCTTAGAACATATGGTTGATACAGTGTTATAT
TTTGAAGGTGATAAGCACCATTCTTATAGAATTCTGCGTTCTGTGAAAAATCGTTTCGGTGCTACCAACGAAATAGGAAT
GTTTGAGATGAAGGAGGAAGGACTGAGTGAGGTAACTAATCCTTCTGCTGTTTTCTTAGATGAAAGATTACCTAATTCTA
CTGGTTCGGCTATTGTTGTATCACTTGAAGGAACTAGACCTATTTTAGCTGATATTCAGGCACTAGTGACTCCTACCGCT
TTTGGCTATGCTAAGAGAACAACATCTGGATTAGATTATAATCGAGTGGCTTTATTACTAGCTGTTTTAGAAAAAAGGGG
TAATTTGATGTTACAAAATCAAGATGCTTTCTTGACTGCTACAGGAGGAATTAAACTTAATGAACCAGCTATTGATTTAG
CTATTTGTATGGCAGTAGCTTCTAGTTATAAGAATAAAGAAATAGCAGTTACTGATTGTTTCGTTGGTGAGGTAGGACTT
ACTGGTGAGATTAGACGAATTAATAATATTGAAGCTCGTGTCAAGGAGGCTGCTACTAGAGGATTTAAACGCATTTTTGT
TCCGAAATATAATGTATCAGCCAAGTTACAATCACACACAACTATTGAAATTGTAGGTGTAATTAGTTTAATGGAAGCAT
TGAAGATTGAGTTTACATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.297

99.782

0.582
  radA Streptococcus mitis NCTC 12261

58.297

99.782

0.582
  radA Streptococcus pneumoniae Rx1

58.297

99.782

0.582
  radA Streptococcus pneumoniae D39

58.297

99.782

0.582
  radA Streptococcus pneumoniae R6

58.297

99.782

0.582
  radA Streptococcus pneumoniae TIGR4

58.297

99.782

0.582
  radA Bacillus subtilis subsp. subtilis str. 168

54.486

99.564

0.542

Multiple sequence alignment