Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZU18_RS04080 Genome accession   NZ_CP160080
Coordinates   849469..850848 (-) Length   459 a.a.
NCBI ID   WP_006735603.1    Uniprot ID   A0A6G7B9Z0
Organism   Lactobacillus iners strain UP11_143_D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 844469..855848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU18_RS04055 (ABZU18_04060) - 844512..845057 (-) 546 WP_006732437.1 hypothetical protein -
  ABZU18_RS04060 (ABZU18_04065) rlmB 845170..845946 (-) 777 WP_006730544.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABZU18_RS04065 (ABZU18_04070) - 845927..846370 (-) 444 WP_006734696.1 Mini-ribonuclease 3 -
  ABZU18_RS04070 (ABZU18_04075) cysS 846357..847769 (-) 1413 WP_006734728.1 cysteine--tRNA ligase -
  ABZU18_RS04075 (ABZU18_04080) gltX 847890..849389 (-) 1500 WP_010221934.1 glutamate--tRNA ligase -
  ABZU18_RS04080 (ABZU18_04085) radA 849469..850848 (-) 1380 WP_006735603.1 DNA repair protein RadA Machinery gene
  ABZU18_RS04085 (ABZU18_04090) - 850848..851399 (-) 552 WP_006735605.1 hypothetical protein -
  ABZU18_RS04090 (ABZU18_04095) - 851547..852893 (+) 1347 WP_006737533.1 C1 family peptidase -
  ABZU18_RS04095 (ABZU18_04100) - 852934..853869 (-) 936 WP_006732426.1 AAA family ATPase -
  ABZU18_RS04100 (ABZU18_04105) - 853933..854610 (-) 678 WP_006732429.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ABZU18_RS04105 (ABZU18_04110) - 854612..854812 (-) 201 WP_006729449.1 hypothetical protein -
  ABZU18_RS04110 (ABZU18_04115) - 854815..855051 (-) 237 WP_006729448.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50384.18 Da        Isoelectric Point: 7.6768

>NTDB_id=1017755 ABZU18_RS04080 WP_006735603.1 849469..850848(-) (radA) [Lactobacillus iners strain UP11_143_D]
MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITSIGNNEPKKLSEIDIKKQIRITTPFS
ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANSHKVLYVSGEESASQIKLRAERLHISDTELLLYSETNMENI
REQIVDLKPEFLVIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVVSLEGTRPILADIQALVTPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGL
TGEIRRINNIEARVKEAATRGFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1017755 ABZU18_RS04080 WP_006735603.1 849469..850848(-) (radA) [Lactobacillus iners strain UP11_143_D]
ATGGCAAAATTAAAAACTCAATATCGTTGTAAGAATTGCGACTATGTATCAGCTTCTTATTTAGGCCGTTGTCCAAATTG
TGGTGCATGGAATCAATTGGAAAAAGAGACTGAAGTTGCTAAAACTACTTCCAATCGGCTTACTGCTAGTAGATTAATTA
CATCTATAGGTAATAATGAGCCTAAAAAATTAAGTGAGATAGACATTAAAAAGCAAATTCGTATTACTACTCCATTTTCT
GAATTAAATCGTGTGCTGGGTGGCGGAATAGTTCCTGGATCTTTAGTGCTTGTTGGTGGTGATCCTGGTATAGGTAAATC
AACTTTAATGCTACAAATTATGGGGAGTATTGCCAATTCTCATAAGGTTTTATATGTTTCAGGTGAAGAATCTGCAAGTC
AAATTAAATTGCGTGCAGAAAGGCTACATATTAGTGATACAGAATTACTTTTATATTCTGAAACTAATATGGAAAATATT
AGAGAACAGATAGTTGATCTTAAGCCGGAATTTTTGGTCATCGATTCAATTCAGACAATGAATGAGCCATCGCAAGATTC
GATGGTAGGATCTGCTACTCAAGTTAGAGAAGTTACAGCGGAATTACTTAAAATTGCTAAAATTGATAAGATAACAGTTT
TCGTTATTGGCCATGTGACCAAAGAAGGTGCTATTGCTGGACCTAAAATCTTAGAACATATGGTTGATACAGTGTTATAT
TTTGAAGGTGATAAGCACCATTCTTATAGAATTCTGCGTTCTGTTAAAAATCGTTTCGGTGCTACCAACGAAATAGGAAT
GTTTGAGATGAAGGAGGAAGGACTGAGTGAGGTAACTAATCCTTCTGCCGTTTTCTTAGATGAAAGATTACCTAATTCTA
CTGGTTCTGCTATTGTTGTATCACTTGAAGGAACTAGACCTATTTTAGCTGATATTCAGGCACTAGTGACTCCTACCGCT
TTTGGCTATGCTAAGAGAACAACATCTGGATTAGATTATAATCGAGTGGCTTTATTACTAGCTGTTTTAGAAAAAAGGGG
TAATTTGATGTTACAAAATCAAGATGCTTTCTTGACTGCTACAGGAGGAATTAAACTTAATGAACCAGCTATTGATTTAG
CTATTTGTATGGCAGTAGCTTCTAGTTATAAGAATAAAGAAATAGCAGTTACTGATTGTTTCGTTGGTGAGGTAGGACTT
ACTGGTGAGATTAGACGAATTAATAATATTGAAGCTCGTGTCAAGGAGGCTGCTACTAGAGGATTTAAACGCATTTTTGT
TCCGAAATATAATGTATCAGCCAAATTACAATCACACACAACTATTGAAATTGTAGGTGTAATTAGTTTAATGGAAGCAT
TGAAGATTGAGTTTACATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7B9Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.297

99.782

0.582
  radA Streptococcus mitis NCTC 12261

58.297

99.782

0.582
  radA Streptococcus pneumoniae Rx1

58.297

99.782

0.582
  radA Streptococcus pneumoniae D39

58.297

99.782

0.582
  radA Streptococcus pneumoniae R6

58.297

99.782

0.582
  radA Streptococcus pneumoniae TIGR4

58.297

99.782

0.582
  radA Bacillus subtilis subsp. subtilis str. 168

54.705

99.564

0.545

Multiple sequence alignment