Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABZU01_RS01520 | Genome accession | NZ_CP160079 |
| Coordinates | 293075..293530 (-) | Length | 151 a.a. |
| NCBI ID | WP_006729287.1 | Uniprot ID | - |
| Organism | Lactobacillus iners strain Liners_2503_V10-0 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 288075..298530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZU01_RS01500 (ABZU01_01495) | dnaB | 288777..290150 (-) | 1374 | WP_006734298.1 | replicative DNA helicase | - |
| ABZU01_RS01505 (ABZU01_01500) | rplI | 290156..290611 (-) | 456 | WP_006729284.1 | 50S ribosomal protein L9 | - |
| ABZU01_RS01510 (ABZU01_01505) | - | 290627..292642 (-) | 2016 | WP_006731401.1 | DHH family phosphoesterase | - |
| ABZU01_RS01515 (ABZU01_01510) | rpsR | 292810..293046 (-) | 237 | WP_006729286.1 | 30S ribosomal protein S18 | - |
| ABZU01_RS01520 (ABZU01_01515) | ssb | 293075..293530 (-) | 456 | WP_006729287.1 | single-stranded DNA-binding protein | Machinery gene |
| ABZU01_RS01525 (ABZU01_01520) | rpsF | 293566..293862 (-) | 297 | WP_006729288.1 | 30S ribosomal protein S6 | - |
| ABZU01_RS01530 (ABZU01_01525) | gyrA | 294041..296488 (-) | 2448 | WP_006731380.1 | DNA gyrase subunit A | - |
| ABZU01_RS01535 (ABZU01_01530) | gyrB | 296498..298459 (-) | 1962 | WP_006729290.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16896.68 Da Isoelectric Point: 4.6797
>NTDB_id=1017732 ABZU01_RS01520 WP_006729287.1 293075..293530(-) (ssb) [Lactobacillus iners strain Liners_2503_V10-0]
MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAENLANFTSKGSLIGVQGRIQTR
SYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFSTTNNVPTEEPKQDPFADTGKTIEISEDDLPF
MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAENLANFTSKGSLIGVQGRIQTR
SYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFSTTNNVPTEEPKQDPFADTGKTIEISEDDLPF
Nucleotide
Download Length: 456 bp
>NTDB_id=1017732 ABZU01_RS01520 WP_006729287.1 293075..293530(-) (ssb) [Lactobacillus iners strain Liners_2503_V10-0]
ATGATTAATAATGTTGTACTCGTTGGTCGTTTAACACGTGATCCTGATTTGCGTACTACTGAAAGTGGAATTTCAGTTGC
TACCTTTACTTTGGCAGTTGATCGTCAATTTTCTAATAGTCAAGGTGAGCGAGAAGCTGATTTTATAAATTGCGTAGTTT
GGCGTAAAGCTGCTGAGAATTTAGCAAACTTTACTTCAAAAGGTTCGCTTATTGGTGTTCAGGGACGTATTCAGACAAGA
AGCTATGATAACAAAGAAGGTCAACGTGTATACGTTACGGAAGTAGTTGTTGATAGTTTTTCATTTTTAGAATCACGTCG
TAGTCGCGAAAATAAACCAGTAGCAAGCAATAATTTCAGCACTACAAATAATGTACCTACTGAGGAACCTAAGCAGGATC
CTTTTGCAGATACAGGTAAGACGATAGAAATTTCAGAAGACGATTTACCGTTTTAA
ATGATTAATAATGTTGTACTCGTTGGTCGTTTAACACGTGATCCTGATTTGCGTACTACTGAAAGTGGAATTTCAGTTGC
TACCTTTACTTTGGCAGTTGATCGTCAATTTTCTAATAGTCAAGGTGAGCGAGAAGCTGATTTTATAAATTGCGTAGTTT
GGCGTAAAGCTGCTGAGAATTTAGCAAACTTTACTTCAAAAGGTTCGCTTATTGGTGTTCAGGGACGTATTCAGACAAGA
AGCTATGATAACAAAGAAGGTCAACGTGTATACGTTACGGAAGTAGTTGTTGATAGTTTTTCATTTTTAGAATCACGTCG
TAGTCGCGAAAATAAACCAGTAGCAAGCAATAATTTCAGCACTACAAATAATGTACCTACTGAGGAACCTAAGCAGGATC
CTTTTGCAGATACAGGTAAGACGATAGAAATTTCAGAAGACGATTTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
100 |
0.669 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.867 |
100 |
0.583 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
70.199 |
0.424 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.376 |
72.185 |
0.371 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
51.376 |
72.185 |
0.371 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.459 |
72.185 |
0.364 |