Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABZT98_RS05840 Genome accession   NZ_CP160078
Coordinates   1180852..1181307 (+) Length   151 a.a.
NCBI ID   WP_006729287.1    Uniprot ID   -
Organism   Lactobacillus iners strain 0998_735_1_CBA_90B_S800     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1175852..1186307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZT98_RS05825 (ABZT98_05815) gyrB 1175922..1177883 (+) 1962 WP_391484590.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABZT98_RS05830 (ABZT98_05820) gyrA 1177893..1180340 (+) 2448 WP_240398606.1 DNA gyrase subunit A -
  ABZT98_RS05835 (ABZT98_05825) rpsF 1180520..1180816 (+) 297 WP_006729288.1 30S ribosomal protein S6 -
  ABZT98_RS05840 (ABZT98_05830) ssb 1180852..1181307 (+) 456 WP_006729287.1 single-stranded DNA-binding protein Machinery gene
  ABZT98_RS05845 (ABZT98_05835) rpsR 1181336..1181572 (+) 237 WP_006729286.1 30S ribosomal protein S18 -
  ABZT98_RS05850 (ABZT98_05840) - 1181740..1183755 (+) 2016 WP_006732072.1 DHH family phosphoesterase -
  ABZT98_RS05855 (ABZT98_05845) rplI 1183771..1184226 (+) 456 WP_006729284.1 50S ribosomal protein L9 -
  ABZT98_RS05860 (ABZT98_05850) dnaB 1184232..1185605 (+) 1374 WP_391484591.1 replicative DNA helicase -
  ABZT98_RS05865 (ABZT98_05855) - 1186147..1186278 (+) 132 WP_257996346.1 hypothetical protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16896.68 Da        Isoelectric Point: 4.6797

>NTDB_id=1017729 ABZT98_RS05840 WP_006729287.1 1180852..1181307(+) (ssb) [Lactobacillus iners strain 0998_735_1_CBA_90B_S800]
MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAENLANFTSKGSLIGVQGRIQTR
SYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFSTTNNVPTEEPKQDPFADTGKTIEISEDDLPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1017729 ABZT98_RS05840 WP_006729287.1 1180852..1181307(+) (ssb) [Lactobacillus iners strain 0998_735_1_CBA_90B_S800]
ATGATTAATAATGTTGTACTCGTTGGTCGTTTAACACGTGATCCTGATTTGCGTACTACTGAAAGTGGAATTTCAGTTGC
TACCTTTACTTTGGCAGTTGATCGTCAATTTTCTAATAGTCAAGGTGAGCGAGAAGCTGATTTTATAAATTGCGTAGTTT
GGCGTAAAGCTGCTGAGAATTTAGCAAACTTTACTTCAAAAGGTTCGCTTATTGGTGTTCAGGGTCGTATTCAGACAAGA
AGCTATGATAACAAAGAAGGGCAACGTGTATACGTTACGGAAGTAGTTGTTGATAGTTTTTCATTTTTAGAATCACGTCG
TAGTCGCGAAAATAAACCAGTAGCAAGCAATAATTTCAGCACTACAAATAATGTACCTACTGAGGAACCTAAGCAGGATC
CTTTCGCAGATACAGGTAAGACTATAGAAATTTCAGAAGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.669
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.867

100

0.583
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

70.199

0.424
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.376

72.185

0.371
  ssbB/cilA Streptococcus mitis NCTC 12261

51.376

72.185

0.371
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.459

72.185

0.364
  ssbB/cilA Streptococcus pneumoniae Rx1

50.459

72.185

0.364
  ssbB/cilA Streptococcus pneumoniae D39

50.459

72.185

0.364
  ssbB/cilA Streptococcus pneumoniae R6

50.459

72.185

0.364
  ssbB/cilA Streptococcus mitis SK321

50.459

72.185

0.364

Multiple sequence alignment