Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZU08_RS02700 Genome accession   NZ_CP160077
Coordinates   531541..532920 (+) Length   459 a.a.
NCBI ID   WP_006733667.1    Uniprot ID   -
Organism   Lactobacillus iners strain 0809_588_1_1_MRS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 526541..537920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU08_RS02670 (ABZU08_02670) - 527338..527574 (+) 237 WP_006729448.1 hypothetical protein -
  ABZU08_RS02675 (ABZU08_02675) - 527577..527777 (+) 201 WP_006729449.1 hypothetical protein -
  ABZU08_RS02680 (ABZU08_02680) - 527779..528456 (+) 678 WP_006732429.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ABZU08_RS02685 (ABZU08_02685) - 528520..529455 (+) 936 WP_006729451.1 AAA family ATPase -
  ABZU08_RS02690 (ABZU08_02690) - 529496..530842 (-) 1347 WP_006729452.1 C1 family peptidase -
  ABZU08_RS02695 (ABZU08_02695) - 530990..531541 (+) 552 WP_006729453.1 hypothetical protein -
  ABZU08_RS02700 (ABZU08_02700) radA 531541..532920 (+) 1380 WP_006733667.1 DNA repair protein RadA Machinery gene
  ABZU08_RS02705 (ABZU08_02705) gltX 533000..534499 (+) 1500 WP_006734071.1 glutamate--tRNA ligase -
  ABZU08_RS02710 (ABZU08_02710) cysS 534620..536032 (+) 1413 WP_240400342.1 cysteine--tRNA ligase -
  ABZU08_RS02715 (ABZU08_02715) - 536019..536462 (+) 444 WP_006729458.1 Mini-ribonuclease 3 -
  ABZU08_RS02720 (ABZU08_02720) rlmB 536443..537219 (+) 777 WP_006730544.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABZU08_RS02725 (ABZU08_02725) - 537332..537877 (+) 546 WP_006732437.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50386.22 Da        Isoelectric Point: 7.6768

>NTDB_id=1017707 ABZU08_RS02700 WP_006733667.1 531541..532920(+) (radA) [Lactobacillus iners strain 0809_588_1_1_MRS1]
MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKLSEIDIKKQIRITTPFS
ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSISNAHKVLYVSGEESASQIKMRAERLHISDTELLLYSETNMENI
REQIVDLKPEFLVIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVVSLEGTRPILADIQALVTPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGL
TGEIRRINNIEARVKEAATRGFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1017707 ABZU08_RS02700 WP_006733667.1 531541..532920(+) (radA) [Lactobacillus iners strain 0809_588_1_1_MRS1]
ATGGCAAAATTAAAAACTCAATATCGTTGTAAGAATTGCGACTATGTATCAGCTTCTTATTTAGGCCGTTGTCCAAATTG
TGGTGCATGGAATCAATTGGAAAAAGAGACTGAAGTTGCTAAAACTACTTCCAATCGGCTTACTGCTAGTAGATTAATTA
CAGCTATAGGTAATAATGAGCCTAAAAAATTAAGTGAGATAGACATTAAAAAGCAAATTCGTATTACTACTCCATTTTCT
GAATTAAATCGTGTGCTGGGTGGCGGAATAGTTCCTGGATCTTTAGTACTTGTTGGTGGTGATCCTGGTATAGGCAAATC
AACTTTAATGCTACAAATTATGGGGAGTATTTCCAATGCTCACAAGGTTTTATATGTTTCAGGTGAGGAATCTGCAAGTC
AAATTAAAATGCGTGCAGAAAGGCTACATATTAGTGATACAGAATTACTTTTATATTCTGAAACTAATATGGAAAATATT
CGCGAACAGATAGTTGATCTTAAGCCGGAATTTTTGGTCATCGATTCAATTCAGACAATGAATGAGCCATCGCAAGATTC
GATGGTAGGATCTGCTACTCAAGTTAGAGAAGTGACAGCGGAATTACTTAAAATTGCTAAAATTGATAAGATAACAGTTT
TTGTTATTGGCCATGTGACCAAAGAAGGTGCTATTGCTGGGCCTAAAATCTTAGAACATATGGTTGATACAGTGTTATAT
TTTGAAGGTGATAAGCACCATTCTTATAGAATTCTGCGTTCTGTGAAAAATCGTTTCGGTGCTACCAACGAAATAGGAAT
GTTTGAGATGAAGGAGGAAGGACTGAGTGAGGTAACTAATCCTTCTGCCGTTTTCTTAGATGAAAGATTACCTAATTCTA
CTGGTTCGGCTATTGTTGTATCACTTGAAGGAACTAGGCCTATTTTAGCTGATATTCAGGCACTAGTGACTCCTACCGCT
TTTGGCTATGCTAAGAGAACAACATCTGGATTAGATTATAATCGAGTGGCGTTATTACTAGCTGTTTTAGAAAAAAGGGG
TAATTTGATGTTGCAAAATCAAGATGCTTTCTTGACTGCTACAGGAGGAATTAAACTTAATGAACCAGCTATTGATTTAG
CTATTTGTATGGCAGTAGCTTCTAGTTATAAGAATAAAGAAATAGCAGTTACTGATTGTTTCGTTGGTGAGGTAGGACTT
ACTGGTGAGATTAGACGAATTAATAATATTGAAGCTCGTGTCAAGGAGGCTGCTACTAGAGGATTTAAACGCATTTTTGT
TCCGAAATATAATGTATCAGCCAAATTACAATCACACACAACTATTGAAATTGTAGGTGTAATTAGTTTAATGGAAGCAT
TGAAGATTGAGTTTACATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.297

99.782

0.582
  radA Streptococcus mitis NCTC 12261

58.297

99.782

0.582
  radA Streptococcus pneumoniae Rx1

58.297

99.782

0.582
  radA Streptococcus pneumoniae D39

58.297

99.782

0.582
  radA Streptococcus pneumoniae R6

58.297

99.782

0.582
  radA Streptococcus pneumoniae TIGR4

58.297

99.782

0.582
  radA Bacillus subtilis subsp. subtilis str. 168

54.486

99.564

0.542

Multiple sequence alignment