Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABX042_RS07745 | Genome accession | NZ_CP160076 |
| Coordinates | 1734653..1735948 (+) | Length | 431 a.a. |
| NCBI ID | WP_367454983.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Amel01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1729653..1740948
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABX042_RS07715 (ABX042_14145) | bioH | 1729985..1730737 (-) | 753 | WP_279037865.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| ABX042_RS07720 (ABX042_14150) | - | 1730736..1731446 (+) | 711 | WP_232335743.1 | ComF family protein | - |
| ABX042_RS07725 (ABX042_14155) | - | 1731775..1732524 (+) | 750 | WP_269146745.1 | septal ring lytic transglycosylase RlpA family protein | - |
| ABX042_RS07730 (ABX042_14160) | ruvA | 1732602..1733183 (+) | 582 | WP_025331789.1 | Holliday junction branch migration protein RuvA | - |
| ABX042_RS07735 (ABX042_14165) | - | 1733227..1733778 (+) | 552 | WP_367454980.1 | 5'-3'-deoxyribonucleotidase | - |
| ABX042_RS07740 (ABX042_14170) | - | 1733823..1734437 (+) | 615 | WP_367454981.1 | Type 1 glutamine amidotransferase-like domain-containing protein | - |
| ABX042_RS07745 (ABX042_14175) | pilA | 1734653..1735948 (+) | 1296 | WP_367454983.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABX042_RS07750 (ABX042_14180) | - | 1736169..1736702 (+) | 534 | WP_025331786.1 | hypothetical protein | - |
| ABX042_RS07755 (ABX042_14185) | - | 1736737..1737849 (-) | 1113 | WP_370578700.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| ABX042_RS07760 (ABX042_14190) | - | 1737870..1739564 (-) | 1695 | WP_370578701.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 46181.47 Da Isoelectric Point: 4.4535
>NTDB_id=1017695 ABX042_RS07745 WP_367454983.1 1734653..1735948(+) (pilA) [Snodgrassella alvi strain Amel01]
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDSVAEKPEQADTAPVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASSVQTPVATENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDSVAEKPEQADTAPVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASSVQTPVATENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE
Nucleotide
Download Length: 1296 bp
>NTDB_id=1017695 ABX042_RS07745 WP_367454983.1 1734653..1735948(+) (pilA) [Snodgrassella alvi strain Amel01]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAACAGCCCGTACCGGCTCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATT
CTGTTGCGGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGGCCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCATCCGTTCAGACACCTGTCGCTACTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCGCAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAGCGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCTGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGTTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTAGGACAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACAGCCAAAGGCGGTATTCTCGCAGCGCTGGCAGCCAAGCGACCG
GTTCCGGTACGTTTTATCGGCGTGGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCTCGGGCATTTGTAGATGCATT
AATTGAGGATGAATAA
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAACAGCCCGTACCGGCTCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATT
CTGTTGCGGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGGCCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCATCCGTTCAGACACCTGTCGCTACTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCGCAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAGCGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCTGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGTTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTAGGACAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACAGCCAAAGGCGGTATTCTCGCAGCGCTGGCAGCCAAGCGACCG
GTTCCGGTACGTTTTATCGGCGTGGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCTCGGGCATTTGTAGATGCATT
AATTGAGGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
64.35 |
100 |
0.666 |