Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX042_RS03490 Genome accession   NZ_CP160076
Coordinates   802978..803448 (+) Length   156 a.a.
NCBI ID   WP_041880343.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel01     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 797978..808448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX042_RS03470 (ABX042_08670) - 799229..799576 (-) 348 WP_041880335.1 hypothetical protein -
  ABX042_RS03475 (ABX042_08675) - 799745..801058 (+) 1314 WP_370579043.1 replication-associated recombination protein A -
  ABX042_RS03480 (ABX042_08680) - 801045..802115 (+) 1071 WP_172397380.1 aldose epimerase family protein -
  ABX042_RS03485 (ABX042_08690) - 802274..802981 (+) 708 WP_279035155.1 phosphoglycolate phosphatase -
  ABX042_RS03490 (ABX042_15625) recX 802978..803448 (+) 471 WP_041880343.1 recombination regulator RecX Regulator
  ABX042_RS03495 (ABX042_08705) - 803598..804551 (-) 954 WP_367453630.1 bile acid:sodium symporter family protein -
  ABX042_RS03500 (ABX042_08710) rpsT 804584..804850 (-) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX042_RS03505 (ABX042_08715) - 804972..806099 (-) 1128 WP_084586657.1 AI-2E family transporter -
  ABX042_RS03510 (ABX042_08720) lpdA 806375..808126 (-) 1752 WP_370579044.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18256.66 Da        Isoelectric Point: 9.1774

>NTDB_id=1017683 ABX042_RS03490 WP_041880343.1 802978..803448(+) (recX) [Snodgrassella alvi strain Amel01]
MKQKISLRARAITLLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKRMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017683 ABX042_RS03490 WP_041880343.1 802978..803448(+) (recX) [Snodgrassella alvi strain Amel01]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTACCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAGCTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAGTCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGTAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTGGATGCAGCTCTGATTGCAGATTATTTACCGGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGCCAGCCTCCCGCTGACTTAAAAGAAAAACATAAACGTATGCATTTTCTTGCTTATCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCAGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment