Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX026_RS09185 Genome accession   NZ_CP160075
Coordinates   2083386..2083856 (+) Length   156 a.a.
NCBI ID   WP_084547443.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel10     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2078386..2088856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX026_RS09165 (ABX026_06265) - 2079638..2079985 (-) 348 WP_084549983.1 hypothetical protein -
  ABX026_RS09170 (ABX026_06270) - 2080154..2081467 (+) 1314 WP_198190157.1 replication-associated recombination protein A -
  ABX026_RS09175 (ABX026_06275) - 2081454..2082524 (+) 1071 WP_367426872.1 aldose epimerase family protein -
  ABX026_RS09180 (ABX026_06280) - 2082682..2083389 (+) 708 WP_367426874.1 phosphoglycolate phosphatase -
  ABX026_RS09185 (ABX026_06285) recX 2083386..2083856 (+) 471 WP_084547443.1 recombination regulator RecX Regulator
  ABX026_RS09190 (ABX026_16890) - 2084005..2084958 (-) 954 WP_371750913.1 bile acid:sodium symporter family protein -
  ABX026_RS09195 (ABX026_06300) rpsT 2084991..2085257 (-) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX026_RS09200 (ABX026_06305) - 2085379..2086506 (-) 1128 WP_084562660.1 AI-2E family transporter -
  ABX026_RS09205 (ABX026_06310) lpdA 2086784..2088535 (-) 1752 WP_198211246.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18185.64 Da        Isoelectric Point: 8.0793

>NTDB_id=1017672 ABX026_RS09185 WP_084547443.1 2083386..2083856(+) (recX) [Snodgrassella alvi strain Amel10]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQINNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017672 ABX026_RS09185 WP_084547443.1 2083386..2083856(+) (recX) [Snodgrassella alvi strain Amel10]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGTAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTTGATGCAGCGCTGATTGCAGATTATTTACCGGACAGAGAACAACAGATAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGTCAGCCTCCCGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment