Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   W903_RS09350 Genome accession   NZ_CP006910
Coordinates   1848215..1849483 (+) Length   422 a.a.
NCBI ID   WP_000774763.1    Uniprot ID   -
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843215..1854483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS09320 (W903_1907) prmA 1843242..1844195 (-) 954 WP_001099287.1 50S ribosomal protein L11 methyltransferase -
  W903_RS09325 (W903_1908) - 1844212..1845855 (-) 1644 WP_000827771.1 DNA/RNA helicase domain-containing protein -
  W903_RS09330 (W903_1909) - 1845865..1846335 (-) 471 WP_001051335.1 DUF3013 family protein -
  W903_RS09335 (W903_1910) - 1846409..1846936 (-) 528 WP_001031088.1 DUF3278 domain-containing protein -
  W903_RS09340 (W903_1911) - 1846939..1847127 (-) 189 WP_001082463.1 helix-turn-helix transcriptional regulator -
  W903_RS09345 (W903_1912) - 1847731..1848222 (+) 492 WP_025194498.1 GNAT family N-acetyltransferase -
  W903_RS09350 (W903_1913) rarA 1848215..1849483 (+) 1269 WP_000774763.1 replication-associated recombination protein A Machinery gene
  W903_RS09360 (W903_1915) - 1850026..1850331 (-) 306 WP_000511797.1 hypothetical protein -
  W903_RS09365 (W903_1916) - 1850315..1850716 (-) 402 WP_000517012.1 hypothetical protein -
  W903_RS11035 (W903_1917) - 1850704..1851912 (-) 1209 WP_000622528.1 hypothetical protein -
  W903_RS09375 (W903_1918) - 1851914..1852246 (-) 333 WP_000792765.1 hypothetical protein -
  W903_RS09380 (W903_1919) - 1852518..1852847 (-) 330 WP_000792758.1 hypothetical protein -
  W903_RS09385 - 1853897..1854202 (+) 306 WP_038406102.1 hypothetical protein -
  W903_RS10965 (W903_1921) - 1854327..1854455 (+) 129 WP_261006129.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46584.00 Da        Isoelectric Point: 6.5117

>NTDB_id=101767 W903_RS09350 WP_000774763.1 1848215..1849483(+) (rarA) [Streptococcus agalactiae CNCTC 10/84]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNAKDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=101767 W903_RS09350 WP_000774763.1 1848215..1849483(+) (rarA) [Streptococcus agalactiae CNCTC 10/84]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGACAACAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCTGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATCCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCCAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAAGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59

Multiple sequence alignment