Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ91_RS06930 Genome accession   NZ_AP027634
Coordinates   1305996..1306625 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PSJ-22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1294918..1317810 1305996..1306625 within 0


Gene organization within MGE regions


Location: 1294918..1317810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ91_RS06870 (VEE40_13080) - 1294918..1295937 (+) 1020 WP_001372523.1 tyrosine-type recombinase/integrase -
  AABJ91_RS06875 (VEE40_13090) yccA 1296345..1297004 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  AABJ91_RS06880 (VEE40_13100) tusE 1297095..1297424 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  AABJ91_RS06885 (VEE40_13110) yccX 1297421..1297699 (-) 279 WP_000048250.1 acylphosphatase -
  AABJ91_RS06890 (VEE40_13120) rlmI 1297794..1298984 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  AABJ91_RS06895 (VEE40_13130) hspQ 1299042..1299359 (+) 318 WP_001295356.1 heat shock protein HspQ -
  AABJ91_RS06900 (VEE40_13140) yccU 1299404..1299817 (-) 414 WP_000665217.1 CoA-binding protein -
  AABJ91_RS06905 (VEE40_13160) yccT 1299990..1300652 (+) 663 WP_000847791.1 DUF2057 family protein -
  AABJ91_RS06910 (VEE40_13170) mgsA 1300748..1301206 (+) 459 WP_000424181.1 methylglyoxal synthase -
  AABJ91_RS06915 (VEE40_13180) helD 1301238..1303292 (-) 2055 WP_001315388.1 DNA helicase IV -
  AABJ91_RS06920 (VEE40_13190) yccF 1303415..1303861 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABJ91_RS06925 (VEE40_13200) yccS 1303871..1306033 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AABJ91_RS06930 (VEE40_13210) sxy/tfoX 1305996..1306625 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ91_RS06935 (VEE40_13220) sulA 1306844..1307353 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABJ91_RS06940 (VEE40_13240) ompA 1307710..1308762 (+) 1053 WP_000750419.1 porin OmpA -
  AABJ91_RS06945 (VEE40_13250) matP 1308837..1309289 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AABJ91_RS06950 (VEE40_13260) ycbZ 1309475..1311235 (+) 1761 WP_000156526.1 Lon protease family protein -
  AABJ91_RS06955 (VEE40_13270) fabA 1311304..1311822 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  AABJ91_RS06960 (VEE40_13280) rmf 1311892..1312059 (-) 168 WP_000828648.1 ribosome modulation factor -
  AABJ91_RS06965 (VEE40_13290) pqiC 1312315..1312878 (-) 564 WP_000759129.1 membrane integrity-associated transporter subunit PqiC -
  AABJ91_RS06970 (VEE40_13300) pqiB 1312875..1314515 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  AABJ91_RS06975 (VEE40_13310) pqiA 1314520..1315773 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  AABJ91_RS06980 (VEE40_13320) uup 1315903..1317810 (-) 1908 WP_000053120.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101767 AABJ91_RS06930 WP_000839153.1 1305996..1306625(-) (sxy/tfoX) [Escherichia coli strain PSJ-22]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101767 AABJ91_RS06930 WP_000839153.1 1305996..1306625(-) (sxy/tfoX) [Escherichia coli strain PSJ-22]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment