Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABX026_RS01805 Genome accession   NZ_CP160075
Coordinates   428098..429393 (+) Length   431 a.a.
NCBI ID   WP_371751085.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423098..434393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX026_RS01775 (ABX026_11185) bioH 423430..424182 (-) 753 WP_025331791.1 pimeloyl-ACP methyl ester esterase BioH -
  ABX026_RS01780 (ABX026_11190) - 424181..424891 (+) 711 WP_367424567.1 ComF family protein -
  ABX026_RS01785 (ABX026_11195) - 425220..425969 (+) 750 WP_269146745.1 septal ring lytic transglycosylase RlpA family protein -
  ABX026_RS01790 (ABX026_11200) ruvA 426047..426628 (+) 582 WP_084548556.1 Holliday junction branch migration protein RuvA -
  ABX026_RS01795 (ABX026_11205) - 426672..427223 (+) 552 WP_367424569.1 5'-3'-deoxyribonucleotidase -
  ABX026_RS01800 (ABX026_11210) - 427268..427882 (+) 615 WP_371751084.1 Type 1 glutamine amidotransferase-like domain-containing protein -
  ABX026_RS01805 (ABX026_11215) pilA 428098..429393 (+) 1296 WP_371751085.1 signal recognition particle-docking protein FtsY Machinery gene
  ABX026_RS01810 (ABX026_11220) - 429567..430139 (+) 573 WP_367424573.1 hypothetical protein -
  ABX026_RS01815 (ABX026_11225) - 430432..432531 (-) 2100 WP_371751086.1 M3 family metallopeptidase -
  ABX026_RS01820 (ABX026_11230) - 432661..433188 (+) 528 WP_371751087.1 gamma carbonic anhydrase family protein -
  ABX026_RS01825 (ABX026_11235) - 433219..433359 (+) 141 WP_171991516.1 hypothetical protein -
  ABX026_RS01830 (ABX026_11240) - 433542..433670 (+) 129 WP_367424575.1 hypothetical protein -
  ABX026_RS01835 (ABX026_11245) - 433681..433875 (-) 195 WP_367424577.1 hypothetical protein -

Sequence

Protein


Download         Length: 431 a.a.        Molecular weight: 46273.62 Da        Isoelectric Point: 4.4921

>NTDB_id=1017659 ABX026_RS01805 WP_371751085.1 428098..429393(+) (pilA) [Snodgrassella alvi strain Amel10]
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDPVAEKPEQADTAPVQPQAETEKDIIVP
TAVDEPAAIAVTDDTASPVQTPVANENTVVIAAEPDTESEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFNARAFVDALIEDE

Nucleotide


Download         Length: 1296 bp        

>NTDB_id=1017659 ABX026_RS01805 WP_371751085.1 428098..429393(+) (pilA) [Snodgrassella alvi strain Amel10]
ATGTTTGGATTTTTTAAGCGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CAGTTGCAGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGGCCGAAACGGAAAAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCTTCACCCGTTCAGACACCTGTCGCTAATGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGAGAGTGAGCAGACAGAAAAACCGGCTAAACTAAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGTAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGTGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTTACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAATGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGCGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAGCGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ATTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGTGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACTGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTAATGCCCGTGCATTTGTAGATGCATT
AATTGAGGATGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(229-428)

SRP54-type protein, helical bundle domain (SRP54_N)

(145-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

62.78

100

0.65

Multiple sequence alignment