Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABX024_RS07430 | Genome accession | NZ_CP160074 |
| Coordinates | 1680332..1681627 (-) | Length | 431 a.a. |
| NCBI ID | WP_370579342.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Amel08 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1675332..1686627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABX024_RS07415 (ABX024_13760) | - | 1676714..1678414 (+) | 1701 | WP_370579339.1 | McrB family protein | - |
| ABX024_RS07420 (ABX024_13750) | - | 1678428..1679543 (+) | 1116 | WP_367416521.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| ABX024_RS07425 (ABX024_16565) | - | 1679579..1680112 (-) | 534 | WP_370579340.1 | hypothetical protein | - |
| ABX024_RS07430 (ABX024_13735) | pilA | 1680332..1681627 (-) | 1296 | WP_370579342.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABX024_RS07435 (ABX024_13730) | - | 1681843..1682457 (-) | 615 | WP_367416518.1 | Type 1 glutamine amidotransferase-like domain-containing protein | - |
| ABX024_RS07440 (ABX024_13725) | - | 1682502..1683053 (-) | 552 | WP_100126044.1 | 5'-3'-deoxyribonucleotidase | - |
| ABX024_RS07445 (ABX024_13720) | ruvA | 1683097..1683678 (-) | 582 | WP_084548556.1 | Holliday junction branch migration protein RuvA | - |
| ABX024_RS07450 (ABX024_16570) | - | 1683756..1684505 (-) | 750 | WP_269146745.1 | septal ring lytic transglycosylase RlpA family protein | - |
| ABX024_RS07455 (ABX024_13695) | - | 1684832..1685542 (-) | 711 | WP_370579344.1 | ComF family protein | - |
| ABX024_RS07460 (ABX024_13690) | bioH | 1685541..1686293 (+) | 753 | WP_370579345.1 | pimeloyl-ACP methyl ester esterase BioH | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 46240.54 Da Isoelectric Point: 4.4816
>NTDB_id=1017642 ABX024_RS07430 WP_370579342.1 1680332..1681627(-) (pilA) [Snodgrassella alvi strain Amel08]
MFGFFKRKKNTEPVAEQPVSAPHQQENSEQLQNIADDSAQTEVIPQPEPAISDPVAEKPEQADTVSVQPQTETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVATENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFNARAFVDALIEDE
MFGFFKRKKNTEPVAEQPVSAPHQQENSEQLQNIADDSAQTEVIPQPEPAISDPVAEKPEQADTVSVQPQTETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVATENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFNARAFVDALIEDE
Nucleotide
Download Length: 1296 bp
>NTDB_id=1017642 ABX024_RS07430 WP_370579342.1 1680332..1681627(-) (pilA) [Snodgrassella alvi strain Amel08]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTATCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGCTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCAGACACCGTTTCCGTTCAACCACAGACCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACAGCCTCACCAGTTCAGACACCTGTCGCTACTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCAGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCAGTGTTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCGCAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGTAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAGCGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ATTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACCGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACGGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTAATGCCCGTGCATTTGTAGATGCATT
AATTGAGGATGAATAA
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTATCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGCTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCAGACACCGTTTCCGTTCAACCACAGACCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACAGCCTCACCAGTTCAGACACCTGTCGCTACTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCAGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCAGTGTTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCGCAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGTAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAGCGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ATTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACCGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACGGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTAATGCCCGTGCATTTGTAGATGCATT
AATTGAGGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
64.22 |
100 |
0.65 |