Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQL25_RS00195 Genome accession   NZ_LS483330
Coordinates   27532..28287 (+) Length   251 a.a.
NCBI ID   WP_023611321.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22532..33287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS09905 - 23573..23779 (-) 207 Protein_14 hypothetical protein -
  DQL25_RS00185 (NCTC8328_00036) pcsB 24935..26131 (+) 1197 WP_012560362.1 peptidoglycan hydrolase PcsB -
  DQL25_RS00190 (NCTC8328_00037) - 26384..27346 (+) 963 WP_009880326.1 ribose-phosphate diphosphokinase -
  DQL25_RS00195 (NCTC8328_00038) recO 27532..28287 (+) 756 WP_023611321.1 DNA repair protein RecO Machinery gene
  DQL25_RS00200 (NCTC8328_00039) plsX 28390..29397 (+) 1008 WP_047235602.1 phosphate acyltransferase PlsX -
  DQL25_RS00205 (NCTC8328_00040) - 29390..29632 (+) 243 WP_014407187.1 phosphopantetheine-binding protein -
  DQL25_RS00210 (NCTC8328_00041) purC 29783..30487 (+) 705 WP_172449988.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29545.02 Da        Isoelectric Point: 6.9077

>NTDB_id=1017638 DQL25_RS00195 WP_023611321.1 27532..28287(+) (recO) [Streptococcus pyogenes strain NCTC8328]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAVIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1017638 DQL25_RS00195 WP_023611321.1 27532..28287(+) (recO) [Streptococcus pyogenes strain NCTC8328]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGTGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment