Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX024_RS00360 Genome accession   NZ_CP160074
Coordinates   86664..87134 (-) Length   156 a.a.
NCBI ID   WP_037391581.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel08     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 81664..92134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX024_RS00340 (ABX024_08740) lpdA 81985..83736 (+) 1752 WP_370579607.1 dihydrolipoyl dehydrogenase -
  ABX024_RS00345 (ABX024_08735) - 84010..85137 (+) 1128 WP_279039358.1 AI-2E family transporter -
  ABX024_RS00350 (ABX024_08730) rpsT 85259..85525 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX024_RS00355 (ABX024_08725) - 85558..86511 (+) 954 WP_367415981.1 bile acid:sodium symporter family protein -
  ABX024_RS00360 (ABX024_08720) recX 86664..87134 (-) 471 WP_037391581.1 recombination regulator RecX Regulator
  ABX024_RS00365 (ABX024_08715) - 87131..87838 (-) 708 WP_084552856.1 phosphoglycolate phosphatase -
  ABX024_RS00370 (ABX024_08710) - 87997..89067 (-) 1071 WP_370579608.1 aldose epimerase family protein -
  ABX024_RS00375 (ABX024_08700) - 89054..90367 (-) 1314 WP_370579609.1 replication-associated recombination protein A -
  ABX024_RS00380 (ABX024_08695) - 90536..90883 (+) 348 WP_025330398.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18173.58 Da        Isoelectric Point: 8.0793

>NTDB_id=1017630 ABX024_RS00360 WP_037391581.1 86664..87134(-) (recX) [Snodgrassella alvi strain Amel08]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017630 ABX024_RS00360 WP_037391581.1 86664..87134(-) (recX) [Snodgrassella alvi strain Amel08]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGCAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTTGATGCAGCTCTGATTGCAGATTATTTACCGGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGCCAGCCTCCCGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment