Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABX025_RS08640 | Genome accession | NZ_CP160073 |
| Coordinates | 1932489..1933784 (+) | Length | 431 a.a. |
| NCBI ID | WP_371751987.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Amel09 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1927489..1938784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABX025_RS08610 (ABX025_01285) | bioH | 1927822..1928574 (-) | 753 | WP_084585717.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| ABX025_RS08615 (ABX025_01290) | - | 1928573..1929283 (+) | 711 | WP_244895645.1 | ComF family protein | - |
| ABX025_RS08620 (ABX025_01300) | - | 1929611..1930360 (+) | 750 | WP_269146745.1 | septal ring lytic transglycosylase RlpA family protein | - |
| ABX025_RS08625 (ABX025_01305) | ruvA | 1930438..1931019 (+) | 582 | WP_025331789.1 | Holliday junction branch migration protein RuvA | - |
| ABX025_RS08630 (ABX025_01310) | - | 1931063..1931614 (+) | 552 | WP_198207400.1 | 5'-3'-deoxyribonucleotidase | - |
| ABX025_RS08635 (ABX025_01315) | - | 1931659..1932273 (+) | 615 | WP_198190362.1 | Type 1 glutamine amidotransferase-like domain-containing protein | - |
| ABX025_RS08640 (ABX025_01320) | pilA | 1932489..1933784 (+) | 1296 | WP_371751987.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABX025_RS08645 (ABX025_15875) | - | 1934005..1934538 (+) | 534 | WP_025331786.1 | hypothetical protein | - |
| ABX025_RS08650 (ABX025_01335) | - | 1934573..1935685 (-) | 1113 | WP_371751988.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| ABX025_RS08655 (ABX025_01340) | - | 1935699..1937396 (-) | 1698 | WP_371751989.1 | McrB family protein | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 46187.57 Da Isoelectric Point: 4.5546
>NTDB_id=1017626 ABX025_RS08640 WP_371751987.1 1932489..1933784(+) (pilA) [Snodgrassella alvi strain Amel09]
MFGFFKRKKNTEPVAEKPVPAPHQQENSKQLQNIADDSVQTEVIPQPEPANSDPVAEKPEQADTAPVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE
MFGFFKRKKNTEPVAEKPVPAPHQQENSKQLQNIADDSVQTEVIPQPEPANSDPVAEKPEQADTAPVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE
Nucleotide
Download Length: 1296 bp
>NTDB_id=1017626 ABX025_RS08640 WP_371751987.1 1932489..1933784(+) (pilA) [Snodgrassella alvi strain Amel09]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAAAAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAAAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTAACAGTGATC
CAGTTGCAGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGGCCGAAACGGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGATGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTTGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGCTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACTGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGGGCATTTGTAGATGCATT
AATTGAGGATGAATAA
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAAAAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAAAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTAACAGTGATC
CAGTTGCAGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGGCCGAAACGGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGATGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTTGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGCTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACTGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGGGCATTTGTAGATGCATT
AATTGAGGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.677 |
100 |
0.659 |