Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX025_RS04685 Genome accession   NZ_CP160073
Coordinates   1050793..1051263 (+) Length   156 a.a.
NCBI ID   WP_279035158.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel09     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1045793..1056263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX025_RS04665 (ABX025_15205) - 1047044..1047391 (-) 348 WP_198206645.1 hypothetical protein -
  ABX025_RS04670 (ABX025_10625) - 1047560..1048873 (+) 1314 WP_371752138.1 replication-associated recombination protein A -
  ABX025_RS04675 (ABX025_10630) - 1048860..1049930 (+) 1071 WP_369432475.1 aldose epimerase family protein -
  ABX025_RS04680 (ABX025_10635) - 1050089..1050796 (+) 708 WP_369432476.1 phosphoglycolate phosphatase -
  ABX025_RS04685 (ABX025_10640) recX 1050793..1051263 (+) 471 WP_279035158.1 recombination regulator RecX Regulator
  ABX025_RS04690 (ABX025_10645) - 1051413..1052366 (-) 954 WP_371752139.1 bile acid:sodium symporter family protein -
  ABX025_RS04695 (ABX025_10650) rpsT 1052399..1052665 (-) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX025_RS04700 (ABX025_15210) - 1052787..1053914 (-) 1128 WP_084586657.1 AI-2E family transporter -
  ABX025_RS04705 (ABX025_10670) lpdA 1054188..1055939 (-) 1752 WP_369432482.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18173.58 Da        Isoelectric Point: 8.0793

>NTDB_id=1017614 ABX025_RS04685 WP_279035158.1 1050793..1051263(+) (recX) [Snodgrassella alvi strain Amel09]
MKQKISLRARAIAILARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017614 ABX025_RS04685 WP_279035158.1 1050793..1051263(+) (recX) [Snodgrassella alvi strain Amel09]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCCATACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGCAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTGGATGCAGCTCTGATTGCAGATTATTTACCGGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGCCAGCCTCCTGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTCCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

53.103

92.949

0.494

Multiple sequence alignment