Detailed information NTG1017584

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABX022_RS03345
• Genome accession: NZ_CP160072
• Coordinates: 742508..743803 (-)
• Length: 431 a.a.
• NCBI ID: WP_198207398.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 737508..748803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX022_RS03330 (ABX022_15285)	-	738888..740588 (+)	1701	WP_198207392.1	AAA family ATPase	-
ABX022_RS03335 (ABX022_03830)	-	740604..741719 (+)	1116	WP_198207394.1	hypothetical protein	-
ABX022_RS03340 (ABX022_03825)	-	741754..742287 (-)	534	WP_198207396.1	hypothetical protein	-
ABX022_RS03345 (ABX022_03820)	pilA	742508..743803 (-)	1296	WP_198207398.1	signal recognition particle-docking protein FtsY	Machinery gene
ABX022_RS03350 (ABX022_03815)	-	744019..744633 (-)	615	WP_198190362.1	Type 1 glutamine amidotransferase-like domain-containing protein	-
ABX022_RS03355 (ABX022_03810)	-	744678..745229 (-)	552	WP_198207400.1	5'-3'-deoxyribonucleotidase	-
ABX022_RS03360 (ABX022_03805)	ruvA	745273..745854 (-)	582	WP_025331789.1	Holliday junction branch migration protein RuvA	-
ABX022_RS03365 (ABX022_03800)	-	745932..746681 (-)	750	WP_269146745.1	septal ring lytic transglycosylase RlpA family protein	-
ABX022_RS03370 (ABX022_03795)	-	747009..747719 (-)	711	WP_232335960.1	ComF family protein	-
ABX022_RS03375 (ABX022_03790)	bioH	747718..748470 (+)	753	WP_367483555.1	pimeloyl-ACP methyl ester esterase BioH	-

Sequence

Protein

• Length: 431 a.a.
• Molecular weight: 46165.52 Da
• Isoelectric Point: 4.5230

>NTDB_id=1017584 ABX022_RS03345 WP_198207398.1 742508..743803(-) (pilA) [Snodgrassella alvi strain Amel07]
MFGFFKRKKNTEPVAEKPVPAPHQQENSEQLQNIADDSAQTEVIPQPEPAISDPVAEKPEQADTASVQPQAETEKDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKDALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE

Nucleotide

• Length: 1296 bp

>NTDB_id=1017584 ABX022_RS03345 WP_198207398.1 742508..743803(-) (pilA) [Snodgrassella alvi strain Amel07]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAAAAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGCTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCAGACACCGCTTCCGTTCAACCACAGGCCGAAACGGAAAAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCTTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTTACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCGCAGGT
GCGCCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGATGCTCTGTATGAATTAC
TGTTGCCGCTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAATGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGCGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCTATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACGGCCAAAGGCGGTATTCTCGCGGCGCTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGTGTGGGCGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGGGCATTTGTAGATGCATT
AATTGAGGATGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (229-428)

• SRP54-type protein, helical bundle domain (SRP54_N) (145-210)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	61.883	100	0.64