Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX016_RS06350 Genome accession   NZ_CP160071
Coordinates   1447526..1447996 (-) Length   156 a.a.
NCBI ID   WP_037391581.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel06     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442526..1452996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX016_RS06330 (ABX016_13275) lpdA 1442848..1444599 (+) 1752 WP_084549993.1 dihydrolipoyl dehydrogenase -
  ABX016_RS06335 (ABX016_13270) - 1444873..1446000 (+) 1128 WP_084586657.1 AI-2E family transporter -
  ABX016_RS06340 (ABX016_13265) rpsT 1446122..1446388 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX016_RS06345 (ABX016_13260) - 1446421..1447374 (+) 954 WP_370580750.1 bile acid:sodium symporter family protein -
  ABX016_RS06350 (ABX016_13250) recX 1447526..1447996 (-) 471 WP_037391581.1 recombination regulator RecX Regulator
  ABX016_RS06355 (ABX016_13245) - 1447993..1448700 (-) 708 WP_100125302.1 phosphoglycolate phosphatase -
  ABX016_RS06360 (ABX016_17460) - 1448858..1449928 (-) 1071 WP_172397380.1 aldose epimerase family protein -
  ABX016_RS06365 (ABX016_13230) - 1449915..1451228 (-) 1314 WP_198185847.1 replication-associated recombination protein A -
  ABX016_RS06370 (ABX016_13225) - 1451397..1451744 (+) 348 WP_370580752.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18173.58 Da        Isoelectric Point: 8.0793

>NTDB_id=1017569 ABX016_RS06350 WP_037391581.1 1447526..1447996(-) (recX) [Snodgrassella alvi strain Amel06]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017569 ABX016_RS06350 WP_037391581.1 1447526..1447996(-) (recX) [Snodgrassella alvi strain Amel06]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGCAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTGGATGCAGCTCTGATTGCAGATTATTTACCGGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGTCAGCCTCCCGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment