Detailed information NTG1017558

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABX016_RS02770
• Genome accession: NZ_CP160071
• Coordinates: 613298..614593 (-)
• Length: 431 a.a.
• NCBI ID: WP_367415025.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 608298..619593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX016_RS02765 (ABX016_16680)	-	610137..613079 (-)	2943	WP_370581224.1	RNA-directed DNA polymerase	-
ABX016_RS02770 (ABX016_02600)	pilA	613298..614593 (-)	1296	WP_367415025.1	signal recognition particle-docking protein FtsY	Machinery gene
ABX016_RS02775 (ABX016_02595)	-	614809..615423 (-)	615	WP_100126045.1	Type 1 glutamine amidotransferase-like domain-containing protein	-
ABX016_RS02780 (ABX016_02590)	-	615468..616019 (-)	552	WP_370581225.1	5'-3'-deoxyribonucleotidase	-
ABX016_RS02785 (ABX016_02585)	ruvA	616063..616644 (-)	582	WP_084548556.1	Holliday junction branch migration protein RuvA	-
ABX016_RS02790 (ABX016_02580)	-	616722..617471 (-)	750	WP_279029077.1	septal ring lytic transglycosylase RlpA family protein	-
ABX016_RS02795 (ABX016_02575)	-	617799..618509 (-)	711	WP_367415021.1	ComF family protein	-
ABX016_RS02800 (ABX016_02570)	bioH	618508..619260 (+)	753	WP_370581226.1	pimeloyl-ACP methyl ester esterase BioH	-

Sequence

Protein

• Length: 431 a.a.
• Molecular weight: 46191.51 Da
• Isoelectric Point: 4.4535

>NTDB_id=1017558 ABX016_RS02770 WP_367415025.1 613298..614593(-) (pilA) [Snodgrassella alvi strain Amel06]
MFGFFKRKKNTEPVAEQPVPATHQQENSEQLQNIADDSVQTEVIPQPEPAISDPVAEKPEQADTAPVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE

Nucleotide

• Length: 1296 bp

>NTDB_id=1017558 ABX016_RS02770 WP_367415025.1 613298..614593(-) (pilA) [Snodgrassella alvi strain Amel06]
ATGTTTGGATTTTTTAAGCGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTACCGGCCACTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CAGTTGCAGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGGCCGAAACGGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGATGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGCCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTTGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGCTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACTGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTGGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGAGCATTTGTAGATGCATT
AATTGAGGATGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (145-210)

• SRP54-type protein, GTPase domain (SRP54) (229-428)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	63.901	100	0.661