Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX014_RS09865 Genome accession   NZ_CP160070
Coordinates   2049227..2049697 (-) Length   156 a.a.
NCBI ID   WP_084547443.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel05     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2044227..2054697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX014_RS09845 (ABX014_05285) lpdA 2044549..2046300 (+) 1752 WP_370577712.1 dihydrolipoyl dehydrogenase -
  ABX014_RS09850 (ABX014_05280) - 2046577..2047704 (+) 1128 WP_174833123.1 AI-2E family transporter -
  ABX014_RS09855 (ABX014_05275) rpsT 2047826..2048092 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX014_RS09860 (ABX014_22585) - 2048125..2049078 (+) 954 WP_198209555.1 bile acid:sodium symporter family protein -
  ABX014_RS09865 (ABX014_05250) recX 2049227..2049697 (-) 471 WP_084547443.1 recombination regulator RecX Regulator
  ABX014_RS09870 (ABX014_22590) - 2049694..2050401 (-) 708 WP_370577713.1 phosphoglycolate phosphatase -
  ABX014_RS09875 (ABX014_22595) - 2050560..2051630 (-) 1071 WP_370577714.1 aldose epimerase family protein -
  ABX014_RS09880 (ABX014_05215) - 2051617..2052930 (-) 1314 WP_370577715.1 replication-associated recombination protein A -
  ABX014_RS09885 (ABX014_05210) - 2053101..2053448 (+) 348 WP_174833128.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18185.64 Da        Isoelectric Point: 8.0793

>NTDB_id=1017545 ABX014_RS09865 WP_084547443.1 2049227..2049697(-) (recX) [Snodgrassella alvi strain Amel05]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQINNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017545 ABX014_RS09865 WP_084547443.1 2049227..2049697(-) (recX) [Snodgrassella alvi strain Amel05]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCACTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGTAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTGGATGCAGCTCTGATTGCAGATTACTTACCGGACAGAGAACAACAGATAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGTCAGCCTCCTGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment