Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABX014_RS05530 | Genome accession | NZ_CP160070 |
| Coordinates | 1179350..1180645 (+) | Length | 431 a.a. |
| NCBI ID | WP_370578465.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Amel05 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1174350..1185645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABX014_RS05500 (ABX014_11670) | bioH | 1174684..1175436 (-) | 753 | WP_370578462.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| ABX014_RS05505 (ABX014_21115) | - | 1175435..1176145 (+) | 711 | WP_370578463.1 | ComF family protein | - |
| ABX014_RS05510 (ABX014_11655) | - | 1176472..1177221 (+) | 750 | WP_269146745.1 | septal ring lytic transglycosylase RlpA family protein | - |
| ABX014_RS05515 (ABX014_11650) | ruvA | 1177299..1177880 (+) | 582 | WP_025331789.1 | Holliday junction branch migration protein RuvA | - |
| ABX014_RS05520 (ABX014_11645) | - | 1177924..1178475 (+) | 552 | WP_370578464.1 | 5'-3'-deoxyribonucleotidase | - |
| ABX014_RS05525 (ABX014_21120) | - | 1178520..1179134 (+) | 615 | WP_038649093.1 | Type 1 glutamine amidotransferase-like domain-containing protein | - |
| ABX014_RS05530 (ABX014_11630) | pilA | 1179350..1180645 (+) | 1296 | WP_370578465.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABX014_RS05535 (ABX014_21125) | - | 1180758..1182758 (-) | 2001 | WP_084562202.1 | DUF3732 domain-containing protein | - |
| ABX014_RS05540 (ABX014_11605) | - | 1182749..1183246 (-) | 498 | WP_370578466.1 | three component ABC system middle component | - |
| ABX014_RS05545 (ABX014_21130) | - | 1183249..1184490 (-) | 1242 | WP_198186481.1 | ABC-three component system protein | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 46180.49 Da Isoelectric Point: 4.4816
>NTDB_id=1017539 ABX014_RS05530 WP_370578465.1 1179350..1180645(+) (pilA) [Snodgrassella alvi strain Amel05]
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDPVAEKTEQADTASVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFNARAFVDALIEDE
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDPVAEKTEQADTASVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFNARAFVDALIEDE
Nucleotide
Download Length: 1296 bp
>NTDB_id=1017539 ABX014_RS05530 WP_370578465.1 1179350..1180645(+) (pilA) [Snodgrassella alvi strain Amel05]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAAACTGAGCAGGCAGACACCGCTTCTGTTCAACCACAGGCCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCCGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGATGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGCCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTTGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGTTGTTGGCTGCCGGCGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAGTGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCTGGCG
ATTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAGAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCTATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACTGCCAAAGGCGGTATTCTCGCGGCGCTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTAATGCCCGTGCATTTGTGGATGCATT
AATTGAGGATGAATAA
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAAACTGAGCAGGCAGACACCGCTTCTGTTCAACCACAGGCCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCCGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGATGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGCCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTTGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGTTGTTGGCTGCCGGCGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAGTGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCTGGCG
ATTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAGAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCTATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACTGCCAAAGGCGGTATTCTCGCGGCGCTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTAATGCCCGTGCATTTGTGGATGCATT
AATTGAGGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
64.302 |
100 |
0.652 |