Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   W903_RS06565 Genome accession   NZ_CP006910
Coordinates   1274332..1274772 (-) Length   146 a.a.
NCBI ID   WP_000431166.1    Uniprot ID   Q8DYZ0
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269332..1279772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS06550 (W903_1342) - 1269532..1270158 (-) 627 WP_000449640.1 GTP pyrophosphokinase family protein -
  W903_RS06555 (W903_1343) - 1270307..1270513 (-) 207 WP_001876841.1 hypothetical protein -
  W903_RS06560 (W903_1344) - 1271165..1273573 (-) 2409 WP_000489013.1 YSIRK signal domain/LPXTG anchor domain surface protein -
  W903_RS06565 (W903_1345) rcrR 1274332..1274772 (-) 441 WP_000431166.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  W903_RS06570 (W903_1346) - 1275048..1277120 (+) 2073 WP_000726915.1 bifunctional metallophosphatase/5'-nucleotidase -
  W903_RS06575 (W903_1347) - 1277157..1277567 (-) 411 WP_000594940.1 peptide deformylase -
  W903_RS06580 (W903_1348) gdhA 1277637..1278986 (-) 1350 WP_000200439.1 NADP-specific glutamate dehydrogenase -
  W903_RS06585 (W903_1349) - 1279154..1279663 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16924.92 Da        Isoelectric Point: 10.0162

>NTDB_id=101746 W903_RS06565 WP_000431166.1 1274332..1274772(-) (rcrR) [Streptococcus agalactiae CNCTC 10/84]
MENPLQKARILVNQLEKYLDHYAKEYDVEHLAGPQGHLVMYLYKHPDKDMSIKAVEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKKKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMENLD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=101746 W903_RS06565 WP_000431166.1 1274332..1274772(-) (rcrR) [Streptococcus agalactiae CNCTC 10/84]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCATTATGCAAAAGAATATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACCTAGTGATGTATCTCTATAAACATCCTGATAAGGATATGTCTATAAAAG
CTGTTGAAGAAATCTTACACATTTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGTTTTATTGCG
ATTGTACCATCTAAGACAGATAAGCGTGTAAAATATCTTTATTTGACTCACTTAGGTAAAAAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCATAGTACTATGTTAGCAGGTATTACTAAAGAAGAGATTCGTACCACCAAAAAGGTTATTA
GGACATTAGCTAAAAATATGGCAATGGAAAATCTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DYZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.143

95.89

0.404

Multiple sequence alignment