Detailed information NTG0101744

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: W903_RS06430
• Genome accession: NZ_CP006910
• Coordinates: 1247496..1249604 (+)
• Length: 702 a.a.
• NCBI ID: WP_038406081.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae CNCTC 10/84
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1242496..1254604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
W903_RS06400 (W903_1312)	-	1242732..1243328 (+)	597	WP_000162275.1	Ltp family lipoprotein	-
W903_RS06410 (W903_1314)	-	1243517..1244622 (+)	1106	WP_141453361.1	IS3-like element ISSag2 family transposase	-
W903_RS06415 (W903_1315)	-	1244747..1245999 (+)	1253	Protein_1196	AbiH family protein	-
W903_RS06420 (W903_1316)	rplL	1246134..1246499 (-)	366	WP_001196973.1	50S ribosomal protein L7/L12	-
W903_RS06425 (W903_1317)	rplJ	1246563..1247063 (-)	501	WP_001287288.1	50S ribosomal protein L10	-
W903_RS06430 (W903_1318)	clpC	1247496..1249604 (+)	2109	WP_038406081.1	AAA family ATPase	Regulator
W903_RS06435 (W903_1319)	mmuM	1249697..1250641 (-)	945	WP_000532342.1	homocysteine S-methyltransferase	-
W903_RS06440 (W903_1320)	-	1250646..1252022 (-)	1377	WP_000427485.1	amino acid permease	-
W903_RS06445 (W903_1321)	-	1252152..1252802 (-)	651	WP_000120095.1	HXXEE domain-containing protein	-
W903_RS10405	-	1252960..1253463 (-)	504	WP_000645480.1	HXXEE domain-containing protein	-
W903_RS06455 (W903_1323)	-	1253555..1254103 (+)	549	WP_000140662.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77747.51 Da
• Isoelectric Point: 4.8125

>NTDB_id=101744 W903_RS06430 WP_038406081.1 1247496..1249604(+) (clpC) [Streptococcus agalactiae CNCTC 10/84]
MANNNFYNRDPFGNMDDIFNSLMGNMGGYNSENKRYLINGREVTPEEFSQYRQTGKLPGQELNNQNTPTNQVSADSVLTK
LGTNLTDQARQHLLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIINGDVPAAIKNKEIISIDIS
SLEAGTQYRGSFEENIQNIIKEVKETGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRNLYEQHHNVVLPDSVLKAAVDLSIQYIPQRNLPDKAIDLIDMTAAHL
AAQHPVTDLKSLEKEIAEQRDKQEKAVNTEDFEEALKVKTRIEELQNQIDNHTEGQKVTATINDIAMSIERLTGVPVSNM
GASDIERLKELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAIVR
LDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPEFLNRFNGVIEFSHLSKDDLSEIVDLMLDEVNQTIGKKGIDLV
VDENVKSHLIELGYDEAMGVRPLRRVIEQEIRDRITDYYLDHTDVKHLKANLQDGQIVISER

Nucleotide

• Length: 2109 bp

>NTDB_id=101744 W903_RS06430 WP_038406081.1 1247496..1249604(+) (clpC) [Streptococcus agalactiae CNCTC 10/84]
ATGGCAAATAATAATTTTTATAATCGTGACCCTTTTGGAAATATGGATGATATTTTTAATTCTCTAATGGGAAATATGGG
GGGCTATAACAGTGAGAATAAGCGATACCTAATCAATGGACGGGAAGTTACTCCTGAAGAATTCAGTCAATATCGTCAAA
CTGGAAAACTCCCCGGTCAAGAGCTAAATAACCAAAACACTCCTACAAACCAAGTCTCTGCAGATAGTGTTTTGACTAAA
TTAGGAACTAATTTAACCGATCAAGCACGTCAGCATTTGCTAGATCCAGTTATTGGACGAAACAAAGAAATTCAGGAAAC
TGCAGAAATTCTAGCTCGTCGTACTAAAAATAATCCTGTTCTGGTTGGTGATGCAGGTGTTGGTAAAACAGCTGTTATTG
AAGGTTTGGCACAAGCAATTATAAATGGTGATGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCGATAGATATTTCT
AGCCTTGAAGCTGGCACCCAATATAGGGGTAGTTTTGAAGAAAATATTCAAAATATCATAAAAGAAGTTAAGGAAACAGG
AAATATTATTCTCTTCTTTGATGAAATACACCAAATATTAGGAGCCGGTTCAACTGGTGGTGATAGTGGCTCTAAGGGGC
TCGCAGATATACTTAAGCCTGCACTTTCACGTGGTGAGTTAACGGTTATAGGTGCAACTACTCAAGATGAATATCGTAAC
ACCATTCTCAAGAATGCTGCCTTAGCACGTCGCTTTAACGAAGTTAAAGTCAATGCACCTTCTGCACAAGATACTTTCAA
TATCCTTATGGGGATAAGAAACCTCTATGAGCAACATCATAATGTTGTTTTACCTGACTCTGTTTTGAAAGCAGCTGTAG
ATTTATCTATTCAATACATCCCACAAAGAAATCTCCCTGATAAAGCAATTGACCTTATTGATATGACTGCTGCACACCTA
GCTGCGCAACATCCCGTAACTGACCTTAAATCCTTAGAAAAAGAAATCGCTGAGCAAAGAGACAAGCAAGAAAAAGCTGT
CAATACTGAAGATTTTGAAGAAGCTCTTAAGGTCAAGACACGCATTGAAGAGTTACAAAACCAGATTGATAATCATACCG
AAGGACAAAAAGTCACTGCAACTATCAACGATATCGCTATGTCAATTGAGCGTCTAACTGGAGTTCCTGTATCAAATATG
GGTGCTAGTGATATTGAACGCTTAAAAGAACTTGGCAATCGTCTAAAAGGTAAAGTCATTGGTCAAAATGATGCTGTTGA
GGCAGTTGCGAGAGCTATTCGCCGAAATCGTGCTGGTTTCGATGATGGTAATCGTCCGATTGGTAGCTTTCTATTTGTTG
GACCAACTGGAGTTGGTAAAACCGAGCTAGCAAAGCAATTAGCTTTTGATATGTTCGGATCAAAGGATGCTATCGTTAGA
CTTGATATGTCTGAATATAATGATCGTACAGCAGTTTCTAAGCTAATTGGAGCGACTGCTGGTTACGTTGGTTATGACGA
CAATAGTAATACACTAACAGAACGTATCCGTCGAAATCCTTATTCTATTGTTCTTCTTGATGAAATCGAAAAAGCTGACC
CGCAAGTTATCACGCTTCTCCTTCAAGTTCTAGATGATGGCCGTTTAACTGATGGTCAAGGAAACACTATTAACTTTAAA
AATACTGTTATCATTGCAACCTCAAATGCAGGTTTTGGAAACGAAGCATTTACAGGTGACAGCGATAAAGACTTGAAAAT
TATGGAACGAATTTCTCCATATTTCCGTCCAGAATTTCTAAATCGTTTCAATGGTGTTATTGAATTCTCTCACCTAAGCA
AAGATGACTTAAGCGAAATTGTAGATTTGATGCTTGATGAAGTTAACCAAACAATTGGCAAAAAAGGAATTGACCTTGTG
GTAGATGAAAATGTTAAATCACACTTAATTGAACTGGGTTATGACGAAGCAATGGGAGTACGTCCATTGCGCCGTGTCAT
CGAGCAAGAAATTCGAGATCGCATCACAGACTACTATCTCGATCATACAGACGTTAAACACCTAAAAGCTAATTTGCAAG
ATGGCCAAATCGTCATTTCTGAAAGATAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA lid domain (AAA_lid_9) (261-358)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.346	99.288	0.47
clpE	Streptococcus pneumoniae Rx1	48.983	91.026	0.446
clpE	Streptococcus pneumoniae D39	48.983	91.026	0.446
clpE	Streptococcus pneumoniae R6	48.983	91.026	0.446
clpE	Streptococcus pneumoniae TIGR4	48.983	91.026	0.446
clpE	Streptococcus mutans UA159	49.367	90.028	0.444
clpC	Bacillus subtilis subsp. subtilis str. 168	44.328	95.442	0.423
clpC	Streptococcus pneumoniae TIGR4	42.994	89.459	0.385
clpC	Streptococcus pneumoniae Rx1	42.994	89.459	0.385
clpC	Streptococcus pneumoniae D39	42.994	89.459	0.385
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.022	90.171	0.379
clpC	Streptococcus thermophilus LMD-9	43.021	86.752	0.373
clpC	Streptococcus thermophilus LMG 18311	42.857	86.752	0.372
clpC	Streptococcus mutans UA159	40.654	91.453	0.372