Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   AB0T70_RS16310 Genome accession   NZ_CP160032
Coordinates   3411210..3412010 (-) Length   266 a.a.
NCBI ID   WP_188137546.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB44-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3406210..3417010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0T70_RS16290 (AB0T70_16290) - 3407275..3407973 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  AB0T70_RS16295 (AB0T70_16295) hisS 3408002..3409294 (-) 1293 WP_000095251.1 histidine--tRNA ligase -
  AB0T70_RS16300 (AB0T70_16300) ispG 3409291..3410406 (-) 1116 WP_002067329.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  AB0T70_RS16305 (AB0T70_16305) - 3410428..3411219 (-) 792 WP_000405163.1 RodZ domain-containing protein -
  AB0T70_RS16310 (AB0T70_16310) pilF 3411210..3412010 (-) 801 WP_188137546.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  AB0T70_RS16315 (AB0T70_16315) rlmN 3412026..3413258 (-) 1233 WP_002067279.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AB0T70_RS16320 (AB0T70_16320) ndk 3413381..3413812 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  AB0T70_RS16325 (AB0T70_16325) iscX 3413926..3414126 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  AB0T70_RS16330 (AB0T70_16330) - 3414226..3414777 (-) 552 WP_000669563.1 phosphatase PAP2 family protein -
  AB0T70_RS16335 (AB0T70_16335) - 3414802..3416100 (-) 1299 WP_086238243.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30064.35 Da        Isoelectric Point: 9.2307

>NTDB_id=1017202 AB0T70_RS16310 WP_188137546.1 3411210..3412010(-) (pilF) [Acinetobacter baumannii strain AB44-AUFP]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKTGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1017202 AB0T70_RS16310 WP_188137546.1 3411210..3412010(-) (pilF) [Acinetobacter baumannii strain AB44-AUFP]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCCCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCCTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAACGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.624

100

0.996
  pilF Acinetobacter baylyi ADP1

74.615

97.744

0.729

Multiple sequence alignment