Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DQL06_RS04770 Genome accession   NZ_LS483321
Coordinates   917252..918322 (+) Length   356 a.a.
NCBI ID   WP_002984598.1    Uniprot ID   P0DH45
Organism   Streptococcus pyogenes strain NCTC8314     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 912252..923322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL06_RS04750 (NCTC8314_00954) - 913303..914001 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  DQL06_RS04755 (NCTC8314_00955) - 914099..914431 (+) 333 WP_002989745.1 putative DNA-binding protein -
  DQL06_RS04760 (NCTC8314_00956) ffh 914446..915963 (+) 1518 WP_111689559.1 signal recognition particle protein -
  DQL06_RS04765 (NCTC8314_00957) - 916080..916778 (-) 699 WP_111689560.1 XRE family transcriptional regulator -
  DQL06_RS04770 (NCTC8314_00958) xerS 917252..918322 (+) 1071 WP_002984598.1 tyrosine recombinase XerS Machinery gene
  DQL06_RS04775 (NCTC8314_00959) - 919022..919504 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  DQL06_RS04780 (NCTC8314_00960) citC 919593..920645 (+) 1053 WP_023078608.1 [citrate (pro-3S)-lyase] ligase -
  DQL06_RS04785 (NCTC8314_00961) - 920755..922149 (-) 1395 WP_172448798.1 oxaloacetate decarboxylase subunit alpha -
  DQL06_RS04790 (NCTC8314_00962) citX 922164..922742 (-) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41471.57 Da        Isoelectric Point: 9.5552

>NTDB_id=1017028 DQL06_RS04770 WP_002984598.1 917252..918322(+) (xerS) [Streptococcus pyogenes strain NCTC8314]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1017028 DQL06_RS04770 WP_002984598.1 917252..918322(+) (xerS) [Streptococcus pyogenes strain NCTC8314]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGAAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DH45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806