Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABWI26_RS05550 Genome accession   NZ_CP159983
Coordinates   1118855..1120228 (+) Length   457 a.a.
NCBI ID   WP_119325919.1    Uniprot ID   -
Organism   Companilactobacillus musae strain zy 130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1113855..1125228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWI26_RS05530 - 1115812..1117155 (-) 1344 WP_119325860.1 C1 family peptidase -
  ABWI26_RS05535 rpiA 1117169..1117858 (-) 690 WP_119325861.1 ribose-5-phosphate isomerase RpiA -
  ABWI26_RS05540 - 1117859..1118161 (-) 303 WP_119325862.1 GNAT family N-acetyltransferase -
  ABWI26_RS05545 - 1118293..1118835 (+) 543 WP_119325863.1 dUTP diphosphatase -
  ABWI26_RS05550 radA 1118855..1120228 (+) 1374 WP_119325919.1 DNA repair protein RadA Machinery gene
  ABWI26_RS05555 - 1120243..1121520 (+) 1278 WP_119325864.1 PIN/TRAM domain-containing protein -
  ABWI26_RS05560 gltX 1121501..1122997 (+) 1497 WP_119325865.1 glutamate--tRNA ligase -
  ABWI26_RS05565 cysS 1123119..1124528 (+) 1410 WP_119325866.1 cysteine--tRNA ligase -
  ABWI26_RS05570 - 1124521..1124934 (+) 414 WP_119325867.1 ribonuclease III domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49844.23 Da        Isoelectric Point: 7.0881

>NTDB_id=1016984 ABWI26_RS05550 WP_119325919.1 1118855..1120228(+) (radA) [Companilactobacillus musae strain zy 130]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVDHPESVKASATPSRRVSDLESKPVKLAQVSFEKEPRVKTELGE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLAKDGGKVLYVSGEESASQIKMRADRLGITGDNLYLYPQTDMSYI
RQTIDDMHPDYLIIDSVQTMDEPEITSAVGSISQIREVTAELMNIAKQQNVTVFVVGHVTKGGAIAGPKILEHMVDTVLY
FEGDTHHSYRILRSVKNRFGSTNEIGIFEMQTKGLVEVANPSEIFLEERLADANGSAVVVSMEGTRPILVEIQSLITPTI
FGNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNIGIPGTDCFVGEVGL
TGEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKNNKIKIIGVSTVSDAMNKIF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1016984 ABWI26_RS05550 WP_119325919.1 1118855..1120228(+) (radA) [Companilactobacillus musae strain zy 130]
TTGGCTAAAGCTAAAACAAAATTTGTCTGTCAAAATTGTGGTTATGTTTCACCAAAGTACTTAGGACGTTGTCCTAATTG
CGGTGTTTGGAATCAAATGGTTGAAGAAGTCGATCATCCAGAATCTGTTAAAGCTAGTGCAACGCCCAGTCGTCGTGTTA
GTGATTTAGAGTCTAAGCCAGTTAAGCTTGCTCAAGTTTCTTTTGAAAAAGAACCAAGAGTTAAAACTGAATTAGGTGAG
TTGAATCGAGTACTTGGTGGTGGAATCGTGCCAGGTTCTTTGATTTTAATTGGTGGAGATCCTGGAATTGGAAAATCAAC
CTTACTAACACAAGTTTCCGGTCAATTGGCCAAAGATGGCGGCAAAGTTTTATATGTATCTGGTGAGGAAAGTGCCTCGC
AAATCAAAATGAGAGCTGATCGTTTAGGAATAACAGGTGATAATTTATATCTTTATCCACAAACTGATATGAGTTACATT
CGTCAAACAATTGATGATATGCATCCAGATTACTTAATCATTGATTCTGTTCAAACAATGGATGAACCTGAAATAACATC
AGCCGTTGGTAGTATTTCACAGATTCGAGAAGTTACAGCAGAATTGATGAATATTGCTAAACAACAGAATGTAACCGTTT
TTGTTGTGGGACATGTTACCAAAGGTGGAGCTATTGCTGGTCCAAAGATTTTGGAACATATGGTGGATACTGTTCTATAC
TTTGAAGGGGACACCCATCATAGCTATCGAATCTTGAGATCGGTTAAGAATCGTTTTGGCTCAACTAACGAGATTGGTAT
TTTTGAGATGCAGACTAAAGGATTGGTAGAAGTGGCCAATCCTTCGGAAATCTTCTTAGAGGAACGTTTAGCTGATGCCA
ATGGTTCCGCGGTTGTGGTTTCTATGGAAGGTACCAGACCAATTTTAGTTGAAATTCAATCGTTGATTACTCCAACTATT
TTTGGAAATGCCAAACGAACAGCAACTGGTTTAGATCATAATCGTGTTTCTGTTATTATGGCGGTTCTGGAAAAACGTGG
AAATCTAATGCTTCAAAACCAAGATGCTTATTTAAAATCAACTGGAGGAGTAAAATTAGATGAGCCAGCGATTGATTTAG
CTTTGGCAATGTCAATTGCATCCAGTTATAAGAATATTGGTATTCCTGGGACTGATTGTTTCGTCGGTGAAGTTGGTTTG
ACGGGTGAGGTTCGTCGAGTCAACCGCATTGATCAACGAGTTAATGAGGCAGAGAAATTAGGATTTAAACGTATTTTTAT
TCCTAAAAACAATTTGGGTGACTGGTCTAAAAATAACAAGATTAAAATAATCGGTGTCAGTACAGTATCAGATGCAATGA
ACAAGATTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

AAA domain (AAA_25)

(59-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.551

100

0.646
  radA Streptococcus pneumoniae D39

64.551

100

0.646
  radA Streptococcus pneumoniae R6

64.551

100

0.646
  radA Streptococcus pneumoniae TIGR4

64.551

100

0.646
  radA Streptococcus mitis NCTC 12261

64.551

100

0.646
  radA Streptococcus mitis SK321

64.551

100

0.646
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.125

0.624

Multiple sequence alignment