Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DQL31_RS04825 Genome accession   NZ_LS483320
Coordinates   920962..922032 (-) Length   356 a.a.
NCBI ID   WP_027968836.1    Uniprot ID   Q5XC26
Organism   Streptococcus pyogenes strain NCTC5164     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 915962..927032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL31_RS04805 (NCTC5164_00951) citX 916543..917121 (+) 579 WP_011888860.1 citrate lyase holo-[acyl-carrier protein] synthase -
  DQL31_RS04810 (NCTC5164_00952) - 917136..918530 (+) 1395 WP_021340040.1 oxaloacetate decarboxylase subunit alpha -
  DQL31_RS04815 (NCTC5164_00953) citC 918640..919692 (-) 1053 WP_111677268.1 [citrate (pro-3S)-lyase] ligase -
  DQL31_RS04820 (NCTC5164_00954) - 919781..920263 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  DQL31_RS04825 (NCTC5164_00955) xerS 920962..922032 (-) 1071 WP_027968836.1 tyrosine recombinase XerS Machinery gene
  DQL31_RS04830 (NCTC5164_00956) - 922501..923199 (+) 699 WP_002993300.1 XRE family transcriptional regulator -
  DQL31_RS04835 (NCTC5164_00957) ffh 923334..924896 (-) 1563 WP_030127241.1 signal recognition particle protein -
  DQL31_RS04840 (NCTC5164_00958) - 924911..925243 (-) 333 WP_002989745.1 putative DNA-binding protein -
  DQL31_RS04845 (NCTC5164_00959) - 925341..926039 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.57 Da        Isoelectric Point: 9.5552

>NTDB_id=1016918 DQL31_RS04825 WP_027968836.1 920962..922032(-) (xerS) [Streptococcus pyogenes strain NCTC5164]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1016918 DQL31_RS04825 WP_027968836.1 920962..922032(-) (xerS) [Streptococcus pyogenes strain NCTC5164]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATTATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5XC26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803