Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABXV02_RS19940 Genome accession   NZ_CP159912
Coordinates   3825414..3825863 (+) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain PY79     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3820414..3830863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS19920 hxlR 3821625..3821987 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  ABXV02_RS19925 hxlA 3822220..3822852 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  ABXV02_RS19930 hxlB 3822858..3823415 (+) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  ABXV02_RS19935 tlpC 3823526..3825246 (+) 1721 Protein_3889 methyl-accepting chemotaxis protein TlpC -
  ABXV02_RS19940 nucA/comI 3825414..3825863 (+) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  ABXV02_RS19945 nin/comJ 3825890..3826288 (+) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  ABXV02_RS19950 bglC 3826325..3827758 (-) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  ABXV02_RS19955 yckD 3827912..3828244 (-) 333 WP_003246247.1 YckD family protein -
  ABXV02_RS19960 yckC 3828326..3828781 (-) 456 WP_003246356.1 RDD family protein -
  ABXV02_RS19965 - 3828800..3828997 (-) 198 WP_119122841.1 hypothetical protein -
  ABXV02_RS19970 yckB 3829159..3830022 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  ABXV02_RS19975 yckA 3830032..3830712 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=1016786 ABXV02_RS19940 WP_003246436.1 3825414..3825863(+) (nucA/comI) [Bacillus subtilis strain PY79]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1016786 ABXV02_RS19940 WP_003246436.1 3825414..3825863(+) (nucA/comI) [Bacillus subtilis strain PY79]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment