Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABXV02_RS16320 Genome accession   NZ_CP159912
Coordinates   3117290..3117868 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain PY79     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112290..3122868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS16285 lepB 3112296..3112802 (-) 507 WP_003233128.1 signal peptidase I -
  ABXV02_RS16290 yhjE 3112804..3113427 (-) 624 WP_010886465.1 VTT domain-containing protein -
  ABXV02_RS16295 - 3113579..3113941 (+) 363 WP_003233132.1 hypothetical protein -
  ABXV02_RS16300 yhjC 3114149..3114349 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ABXV02_RS16305 yhjB 3114346..3115815 (+) 1470 WP_003233134.1 sodium:solute symporter -
  ABXV02_RS16310 yhjA 3115858..3116127 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  ABXV02_RS16315 yhxD 3116344..3117243 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  ABXV02_RS16320 comK 3117290..3117868 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ABXV02_RS16325 yhzC 3118161..3118394 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  ABXV02_RS16330 yhxC 3118422..3119279 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  ABXV02_RS16335 comW 3119391..3120920 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  ABXV02_RS16340 hemAT 3121059..3122357 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1016770 ABXV02_RS16320 WP_003245329.1 3117290..3117868(-) (comK) [Bacillus subtilis strain PY79]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1016770 ABXV02_RS16320 WP_003245329.1 3117290..3117868(-) (comK) [Bacillus subtilis strain PY79]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment