Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQM44_RS09375 Genome accession   NZ_LS483318
Coordinates   1862248..1863957 (-) Length   569 a.a.
NCBI ID   WP_022555172.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1857248..1868957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS09355 (NCTC5370_01919) radA 1857581..1858942 (-) 1362 WP_037589774.1 DNA repair protein RadA Machinery gene
  DQM44_RS09360 (NCTC5370_01920) - 1859025..1859471 (-) 447 WP_003053378.1 dUTP diphosphatase -
  DQM44_RS09365 (NCTC5370_01921) - 1859579..1860346 (-) 768 WP_046165980.1 epoxyqueuosine reductase QueH -
  DQM44_RS09370 (NCTC5370_01922) - 1860464..1862248 (-) 1785 WP_022555171.1 ABC transporter ATP-binding protein -
  DQM44_RS09375 (NCTC5370_01923) rcrP 1862248..1863957 (-) 1710 WP_022555172.1 ABC transporter ATP-binding protein Regulator
  DQM44_RS09380 (NCTC5370_01924) rcrR 1863950..1864399 (-) 450 WP_003053369.1 MarR family transcriptional regulator Regulator
  DQM44_RS09385 (NCTC5370_01925) - 1864600..1865616 (+) 1017 WP_003053365.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQM44_RS09390 (NCTC5370_01926) hasC 1865648..1866550 (+) 903 WP_003061497.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  DQM44_RS09395 (NCTC5370_01927) - 1866742..1867356 (+) 615 WP_022555173.1 DUF6198 family protein -
  DQM44_RS09400 (NCTC5370_01928) - 1867533..1868207 (-) 675 WP_003053389.1 rhomboid family intramembrane serine protease -
  DQM44_RS09405 (NCTC5370_01929) - 1868204..1868731 (-) 528 WP_022555174.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63347.95 Da        Isoelectric Point: 5.4362

>NTDB_id=1016769 DQM44_RS09375 WP_022555172.1 1862248..1863957(-) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MLKEAILRYKWYALGSLIMIIGVVASSLLQPHYLKDVLSAVIQNNQDKIYNVGILLLIIALMGLIAGAVNTILAAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDINQIQNLVMMLFQVLFRLPILFIGAFIMAVQTLPDLWWVIVLMV
ILIGLIMALVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEQEQYAKFKETSNELLDLNLFIGYGFSLMQPAL
MLVSYLAVYVSIYMVSGMVETDPTVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSISRLKEVLDTESTMTFDTEQE
EEVSGSIVFEDVSFTYPNDDEPTLRHISFRIEPGQMVGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKPIKSLSQATL
RQTVSIVLQKAILFSGTIADNLRQGSATADDYAMERAARIAQAKEFIDRMDDRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSERLVQEALNKELKETTTVIIAQKISSVVKADKILVLDQGQLIGEGTHAELVANNAIYREIY
ETQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=1016769 DQM44_RS09375 WP_022555172.1 1862248..1863957(-) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGCTTAAAGAAGCGATTTTGCGTTACAAATGGTACGCATTGGGCTCGCTCATCATGATTATTGGGGTGGTAGCGAGCAG
TTTGCTTCAGCCTCATTATTTAAAAGATGTGCTGAGTGCTGTTATTCAAAATAACCAAGATAAGATTTACAATGTGGGGA
TATTGTTGCTTATCATTGCGCTGATGGGATTGATTGCAGGGGCAGTTAATACTATTTTAGCTGCTAAGATTGCTCAAGGG
GTCTCAGCGGATATTCGTGAGAAGACCTTCCGAAAAATTCAGAGTTTTTCTTATGCCAATGTAGAAGCTTTCAATGCTGG
GAACCTCGTGGTTCGGATGACCAATGATATTAATCAAATTCAAAATTTGGTAATGATGCTGTTTCAAGTGCTTTTTCGTC
TGCCGATTCTCTTTATTGGAGCTTTTATCATGGCGGTGCAGACCCTACCTGACTTGTGGTGGGTGATTGTGCTGATGGTT
ATTTTAATTGGTCTTATCATGGCTTTGGTCATGAGTCAGATGGGCCCACGTTTTGGGAAATTCCAAAAGTTGATGGACAA
GATCAATCGAATTGCTAAGGAAAATCTTCGTGGCGTGCGTGTGGTTAAATCTTTTGTGCAAGAACAGGAACAATATGCCA
AATTTAAAGAAACGTCCAATGAACTATTAGATTTGAATCTCTTTATCGGCTACGGTTTTTCGTTGATGCAACCTGCTTTA
ATGTTGGTATCTTATCTGGCAGTGTACGTGTCCATCTATATGGTTTCAGGCATGGTTGAAACAGATCCTACCGTTATTGG
GAATATTGCTTCTTTCATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTTGGCTTTATGGGCATGCAAGCAA
GTCGTGCCTTTGTCTCTATTAGTCGTCTCAAAGAGGTGCTAGATACTGAGTCAACCATGACCTTTGACACCGAGCAAGAA
GAAGAGGTTTCAGGTAGTATTGTCTTTGAGGATGTCAGCTTTACTTATCCTAATGATGATGAGCCGACCTTACGCCATAT
TTCCTTTAGGATTGAACCTGGTCAAATGGTTGGTGTTGTCGGTGCTACTGGTGCTGGGAAGTCTACACTGGCACAGCTTA
TTCCGCGCTTGTTTGACCCGCAAGAAGGTCAAATCTTGCTGGGAGGCAAACCGATTAAATCCTTGAGCCAAGCGACTCTT
CGTCAAACGGTTTCTATCGTGTTGCAAAAGGCTATTCTTTTTTCGGGAACCATTGCAGACAATCTCCGTCAAGGATCAGC
AACTGCAGATGATTATGCCATGGAACGAGCAGCGCGTATTGCTCAAGCCAAAGAATTTATCGATCGTATGGATGACCGCT
ATGAAAGCCAAGTGGAAGAACGGGGCAATAACTTCTCTGGTGGTCAAAAACAACGAATGTCGATTGCGCGTGGTGTTATT
AACCAACCTAAGATTCTTGTATTGGATGACTCAACATCGGCTCTGGATGCCAAGTCAGAAAGATTAGTTCAAGAAGCCTT
GAATAAAGAGTTGAAAGAGACCACCACAGTGATCATTGCCCAAAAAATTTCGTCAGTGGTAAAGGCTGATAAGATTTTAG
TTCTCGATCAGGGCCAACTGATTGGCGAAGGAACTCATGCTGAGTTGGTAGCTAATAATGCGATTTATCGTGAAATTTAT
GAGACCCAAAAAGGGAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

34.915

100

0.362

Multiple sequence alignment