Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ABXV02_RS15865 Genome accession   NZ_CP159912
Coordinates   3027395..3028348 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain PY79     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022395..3033348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS15835 appD 3022514..3023500 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  ABXV02_RS15840 yjaZ 3023692..3024477 (-) 786 WP_003232967.1 DUF2268 domain-containing protein -
  ABXV02_RS15845 fabF 3024553..3025794 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  ABXV02_RS15850 fabH 3025817..3026755 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  ABXV02_RS15855 yjzB 3026920..3027159 (+) 240 WP_003232972.1 spore coat protein YjzB -
  ABXV02_RS15860 comZ 3027189..3027380 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  ABXV02_RS15865 med 3027395..3028348 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  ABXV02_RS15870 - 3028439..3028996 (-) 558 WP_003232974.1 hypothetical protein -
  ABXV02_RS15875 - 3029078..3029812 (-) 735 WP_003245223.1 hypothetical protein -
  ABXV02_RS15880 yjzD 3030061..3030246 (+) 186 WP_003245236.1 DUF2929 domain-containing protein -
  ABXV02_RS15885 yjzC 3030292..3030471 (-) 180 WP_003245356.1 YjzC family protein -
  ABXV02_RS15890 argF 3030557..3031516 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=1016767 ABXV02_RS15865 WP_003245494.1 3027395..3028348(-) (med) [Bacillus subtilis strain PY79]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1016767 ABXV02_RS15865 WP_003245494.1 3027395..3028348(-) (med) [Bacillus subtilis strain PY79]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment