Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ABXV02_RS14250 Genome accession   NZ_CP159912
Coordinates   2740611..2741186 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain PY79     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2735611..2746186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS14225 mobB 2736007..2736528 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  ABXV02_RS14230 glp 2736489..2737781 (-) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  ABXV02_RS14235 moeB 2737799..2738818 (-) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  ABXV02_RS14240 mobA 2738869..2739468 (-) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  ABXV02_RS14245 cse15 2739605..2740570 (+) 966 WP_003245018.1 spore protein Cse15 -
  ABXV02_RS14250 rok 2740611..2741186 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ABXV02_RS14255 ykuV 2741652..2742098 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  ABXV02_RS14260 ahpA 2742170..2742712 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ABXV02_RS14265 mscT 2742949..2743752 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  ABXV02_RS14270 ykuS 2743789..2744034 (-) 246 WP_003232382.1 YkuS family protein -
  ABXV02_RS14275 dapI 2744096..2745220 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  ABXV02_RS14280 dapD 2745290..2746000 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=1016757 ABXV02_RS14250 WP_003232378.1 2740611..2741186(-) (rok) [Bacillus subtilis strain PY79]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1016757 ABXV02_RS14250 WP_003232378.1 2740611..2741186(-) (rok) [Bacillus subtilis strain PY79]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment