Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABXV02_RS10935 Genome accession   NZ_CP159912
Coordinates   2038736..2039356 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PY79     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2033736..2044356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS10915 dnaD 2034027..2034725 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  ABXV02_RS10920 nth 2034744..2035403 (+) 660 WP_009967580.1 endonuclease III -
  ABXV02_RS10925 ypoC 2035400..2035894 (+) 495 WP_009967579.1 YpoC family protein -
  ABXV02_RS10930 ponA 2035970..2038714 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  ABXV02_RS10935 recU 2038736..2039356 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ABXV02_RS10940 yppC 2039397..2040359 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ABXV02_RS10945 sspM 2040384..2040488 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ABXV02_RS10950 yppD 2040687..2040932 (+) 246 WP_004398488.1 YppD family protein -
  ABXV02_RS10955 yppE 2040978..2041349 (+) 372 WP_003246080.1 YppE family protein -
  ABXV02_RS10960 yppF 2041388..2041576 (-) 189 WP_003230690.1 YppF family protein -
  ABXV02_RS10965 sppG 2041764..2042141 (+) 378 WP_004398696.1 YppG family protein -
  ABXV02_RS10970 ypqA 2042162..2042581 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ABXV02_RS10975 ptsA 2042719..2043225 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1016751 ABXV02_RS10935 WP_004399067.1 2038736..2039356(-) (recU) [Bacillus subtilis strain PY79]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1016751 ABXV02_RS10935 WP_004399067.1 2038736..2039356(-) (recU) [Bacillus subtilis strain PY79]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment