Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABXV02_RS09950 Genome accession   NZ_CP159912
Coordinates   1861319..1862122 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PY79     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1856319..1867122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS09930 yqxC 1856429..1857274 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  ABXV02_RS09935 argR 1857372..1857821 (+) 450 WP_003230265.1 arginine repressor ArgR -
  ABXV02_RS09940 recN 1857858..1859588 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  ABXV02_RS09945 spoIVB 1859763..1861043 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  ABXV02_RS09950 spo0A 1861319..1862122 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ABXV02_RS09955 yqiG 1862587..1863705 (-) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  ABXV02_RS09960 - 1863778..1863930 (-) 153 WP_003230276.1 hypothetical protein -
  ABXV02_RS09965 yqiH 1864238..1864531 (+) 294 WP_003230284.1 lipoprotein -
  ABXV02_RS09970 yqiI 1864546..1865166 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  ABXV02_RS09975 glpQB 1865245..1865976 (+) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1016750 ABXV02_RS09950 WP_003226427.1 1861319..1862122(+) (spo0A) [Bacillus subtilis strain PY79]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1016750 ABXV02_RS09950 WP_003226427.1 1861319..1862122(+) (spo0A) [Bacillus subtilis strain PY79]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment