Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABXV02_RS09420 Genome accession   NZ_CP159912
Coordinates   1770444..1771211 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain PY79     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1765444..1776211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS09390 pgpH 1765740..1767875 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  ABXV02_RS09395 ybeY 1767876..1768349 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ABXV02_RS09400 unpK 1768330..1768701 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  ABXV02_RS09405 - 1768820..1769230 (+) 411 WP_003230049.1 cytidine deaminase -
  ABXV02_RS09410 era 1769211..1770116 (+) 906 WP_003230051.1 GTPase Era -
  ABXV02_RS09415 yqzL 1770264..1770407 (+) 144 WP_003230053.1 YqzL family protein -
  ABXV02_RS09420 recO 1770444..1771211 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  ABXV02_RS09425 glyQ 1771508..1772395 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ABXV02_RS09430 glyS 1772388..1774427 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  ABXV02_RS09435 ccpN 1774560..1775198 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  ABXV02_RS09440 ppsR 1775224..1776036 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=1016739 ABXV02_RS09420 WP_003230055.1 1770444..1771211(+) (recO) [Bacillus subtilis strain PY79]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1016739 ABXV02_RS09420 WP_003230055.1 1770444..1771211(+) (recO) [Bacillus subtilis strain PY79]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment