Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABXV02_RS07880 Genome accession   NZ_CP159912
Coordinates   1514985..1515731 (+) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus subtilis strain PY79     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509985..1520731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS07865 - 1510212..1510403 (-) 192 WP_003222590.1 hypothetical protein -
  ABXV02_RS07870 valS 1510851..1513493 (+) 2643 WP_004398606.1 valine--tRNA ligase -
  ABXV02_RS07875 folC 1513553..1514845 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABXV02_RS07880 comC 1514985..1515731 (+) 747 WP_010886586.1 A24 family peptidase Machinery gene
  ABXV02_RS07885 spoIIB 1515865..1516863 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  ABXV02_RS07890 maf 1517016..1517585 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ABXV02_RS07895 radC 1517622..1518317 (+) 696 WP_003246034.1 DNA repair protein RadC -
  ABXV02_RS07900 mreB 1518409..1519422 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ABXV02_RS07905 mreC 1519453..1520325 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=1016731 ABXV02_RS07880 WP_010886586.1 1514985..1515731(+) (comC) [Bacillus subtilis strain PY79]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1016731 ABXV02_RS07880 WP_010886586.1 1514985..1515731(+) (comC) [Bacillus subtilis strain PY79]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment